RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ZSCAN5BA6NJL1 495 aa16.21■□□□□ 0.19
VIM-206ENST00000487938 M0R233 179 aa16.21■□□□□ 0.19
VIM-206ENST00000487938 CREBL2O60519 120 aaPredicted RBP16.21■□□□□ 0.19
VIM-206ENST00000487938 SLC16A7O60669 478 aa16.21■□□□□ 0.19
VIM-206ENST00000487938 SLC25A12O75746 678 aa16.21■□□□□ 0.19
VIM-206ENST00000487938 ZNF432O94892 652 aa16.21■□□□□ 0.19
VIM-206ENST00000487938 LDOC1O95751 146 aaPredicted RBP16.21■□□□□ 0.19
VIM-206ENST00000487938 PNPP00491 289 aa16.21■□□□□ 0.19
VIM-206ENST00000487938 RASGEF1BQ0VAM2 473 aa16.21■□□□□ 0.19
VIM-206ENST00000487938 HYAL4Q2M3T9 481 aa16.21■□□□□ 0.19
VIM-206ENST00000487938 C9orf40Q8IXQ3 194 aa16.21■□□□□ 0.19
VIM-206ENST00000487938 MCHR2Q969V1 340 aa16.21■□□□□ 0.19
VIM-206ENST00000487938 LILRA5A6NI73 299 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 CTAG2O75638 210 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 KDM4BO94953 1096 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 ITGA5P08648 1049 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 SPARCP09486 303 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 VSIG10L2P0DP72 767 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 SLC6A8P48029 635 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 BIKQ13323 160 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 SLC17A1Q14916 467 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 ACKR1Q16570 336 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 C2orf76Q3KRA6 126 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 HLA-DQA1Q5Y7H0 255 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 ZNF626Q68DY1 528 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 MDGA2Q7Z553 956 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 UXS1Q8NBZ7 420 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 OR4C16Q8NGL9 310 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 SUN5Q8TC36 379 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 RADILQ96JH8 1075 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 TRAV36DV7A0A075B6V5 113 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 TRAV18A0A075B6X5 111 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 H7C417 338 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 DOK2O60496 412 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 OR6A2O95222 327 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 SIX6O95475 246 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 NME1P15531 152 aaKnown RBP16.2■□□□□ 0.18
VIM-206ENST00000487938 ZNF250P15622 560 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 CXCL2P19875 107 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 NUDT1P36639 197 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 MNDAP41218 407 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 POU3F4P49335 361 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 OPCMLQ14982 345 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 CSRP2Q16527 193 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 SIGIRRQ6IA17 410 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 COMMD7Q86VX2 200 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 SPICQ8N5J4 248 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 C15orf40Q8WUR7 153 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 OR1F2PQ96R84 312 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 GAL3ST1Q99999 423 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 TBL1XR1Q9BZK7 514 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 GPN1Q9HCN4 374 aaPredicted RBP16.2■□□□□ 0.18
VIM-206ENST00000487938 MTFP1Q9UDX5 166 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 AUP1Q9Y679 476 aa16.2■□□□□ 0.18
VIM-206ENST00000487938 GGT3PA6NGU5 568 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 I3L521 148 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 PDGFAP04085 211 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 RLN1P04808 185 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 GP1BBP13224 206 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 UBE2MP61081 183 aaKnown RBP16.19■□□□□ 0.18
VIM-206ENST00000487938 OC90Q02509 493 aaPredicted RBP16.19■□□□□ 0.18
VIM-206ENST00000487938 EBPQ15125 230 aaKnown RBP16.19■□□□□ 0.18
VIM-206ENST00000487938 NSDHLQ15738 373 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 OR5M10Q6IEU7 315 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 ANKRD16Q6P6B7 361 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 OR8B4Q96RC9 309 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 MNTQ99583 582 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 GINS4Q9BRT9 223 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 PTDSS2Q9BVG9 487 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 MRPL22Q9NWU5 206 aaKnown RBP16.19■□□□□ 0.18
VIM-206ENST00000487938 CDV3Q9UKY7 258 aaKnown RBP16.19■□□□□ 0.18
VIM-206ENST00000487938 ARID1BQ8NFD5 2236 aaPredicted RBP16.19■□□□□ 0.18
VIM-206ENST00000487938 RP1P56715 2156 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 IGKV3D-11A0A0A0MRZ8 115 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 PRSS37A4D1T9 235 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 SCO1O75880 301 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 CPN1P15169 458 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 CD38P28907 300 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 AP2S1P53680 142 aaPredicted RBP16.19■□□□□ 0.18
VIM-206ENST00000487938 INSM1Q01101 510 aaPredicted RBP16.19■□□□□ 0.18
VIM-206ENST00000487938 PLCXD2Q0VAA5 305 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 DNM1P46Q6ZS02 220 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 MAMDC2Q7Z304 686 aaPredicted RBP16.19■□□□□ 0.18
VIM-206ENST00000487938 KDM8Q8N371 416 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 PLPP7Q8NBV4 271 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 OR8S1Q8NH09 359 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 DVL3Q92997 716 aaPredicted RBP16.19■□□□□ 0.18
VIM-206ENST00000487938 ELMOD3Q96FG2 381 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 OR11A1Q9GZK7 315 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 NARFLQ9H6Q4 476 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 C12orf10Q9HB07 376 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 MMACHCQ9Y4U1 282 aa16.19■□□□□ 0.18
VIM-206ENST00000487938 IGHV1OR15-9A0A0B4J2B8 117 aa16.18■□□□□ 0.18
VIM-206ENST00000487938 SUSD5O60279 629 aa16.18■□□□□ 0.18
VIM-206ENST00000487938 TSPAN2O60636 221 aa16.18■□□□□ 0.18
VIM-206ENST00000487938 FOXL2P58012 376 aa16.18■□□□□ 0.18
VIM-206ENST00000487938 RPL27P61353 136 aaKnown RBP16.18■□□□□ 0.18
VIM-206ENST00000487938 MELKQ14680 651 aa16.18■□□□□ 0.18
VIM-206ENST00000487938 C2orf68Q2NKX9 166 aa16.18■□□□□ 0.18
VIM-206ENST00000487938 CLLU1Q5K131 121 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms