RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 TCTAP57738 103 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 TAS2R40P59535 323 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 GALK2Q01415 458 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 IRF8Q02556 426 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 CETN1Q12798 172 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 SELPLGQ14242 412 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 FAM153CQ494X1 144 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 ANKRD20A4Q4UJ75 823 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 HIKESHIQ53FT3 197 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 ANKRD20A2Q5SQ80 823 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 TSTD2Q5T7W7 516 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 ANKRD20A1Q5TYW2 823 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 ANKRD20A3Q5VUR7 823 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 LRIG3Q6UXM1 1119 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 CENPVQ7Z7K6 275 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-207ENST00000468384 ADAMTSL2Q86TH1 951 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 LRRC28Q86X40 367 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-207ENST00000468384 LYPD6Q86Y78 171 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 ANKRD13BQ86YJ7 626 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 OTUD6BQ8N6M0 293 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 FAM184AQ8NB25 1140 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 SETD6Q8TBK2 473 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 TMEM255BQ8WV15 326 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 ZNF75CPQ92670 426 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-207ENST00000468384 KRT35Q92764 455 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 SNAPC3Q92966 411 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 PTP4A1Q93096 173 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 CPNE4Q96A23 557 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-207ENST00000468384 FAM162AQ96A26 154 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 FBXL8Q96CD0 374 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 OMA1Q96E52 524 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 RBM18Q96H35 190 aaKnown RBP3.83□□□□□ -1.8
HMGB1-207ENST00000468384 RITA1Q96K30 269 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 TMEM237Q96Q45 408 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 ZNF300Q96RE9 604 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-207ENST00000468384 PEBP4Q96S96 227 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 FERMT1Q9BQL6 677 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 NAT10Q9H0A0 1025 aaKnown RBP3.83□□□□□ -1.8
HMGB1-207ENST00000468384 SLC25A51Q9H1U9 297 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 GOLPH3LQ9H4A5 285 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 TMEM185BQ9H7F4 350 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 COPS7BQ9H9Q2 264 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-207ENST00000468384 MOV10Q9HCE1 1003 aaKnown RBP3.83□□□□□ -1.8
HMGB1-207ENST00000468384 TIGARQ9NQ88 270 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 HINT3Q9NQE9 182 aaKnown RBP3.83□□□□□ -1.8
HMGB1-207ENST00000468384 PFDN4Q9NQP4 134 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 HAO2Q9NYQ3 351 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 MED11Q9P086 117 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 NUP214P35658 2090 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-207ENST00000468384 LPAP08519 4548 aa3.83□□□□□ -1.8
HMGB1-207ENST00000468384 A0A096LPK6 155 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 A4D1N5 150 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 KCNK1O00180 336 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 CCL22O00626 93 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 PSMA7O14818 248 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 CETN3O15182 167 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 OR1F1O43749 312 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 UPK3AO75631 287 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 LSM8O95777 96 aaKnown RBP3.82□□□□□ -1.8
HMGB1-207ENST00000468384 PAHP00439 452 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 ETS2P15036 469 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 HSD17B2P37059 387 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 INSL3P51460 131 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 TGFBR3Q03167 851 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 ZBTB17Q13105 803 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 NAE1Q13564 534 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 NNATQ16517 81 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 ZCWPW2Q504Y3 356 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 C1orf134Q5TEV5 83 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 Q6ZR54 194 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 C18orf65Q6ZTR6 163 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 SERPINA11Q86U17 422 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 MYPOPQ86VE0 399 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-207ENST00000468384 PARP16Q8N5Y8 322 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 OR52E4Q8NGH9 312 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 OR13C4Q8NGS5 318 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 WDR20Q8TBZ3 569 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 NPRL2Q8WTW4 380 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 RAPGEF5Q92565 580 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 APH1AQ96BI3 265 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 ZNF830Q96NB3 372 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-207ENST00000468384 SSX3Q99909 188 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 PRSS22Q9GZN4 317 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 NXF5Q9H1B4 397 aaKnown RBP3.82□□□□□ -1.8
HMGB1-207ENST00000468384 NOX3Q9HBY0 568 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 SIRT7Q9NRC8 400 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 EXOC1Q9NV70 894 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 PDE10AQ9Y233 779 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 CLIC4Q9Y696 253 aa3.82□□□□□ -1.8
HMGB1-207ENST00000468384 IGHV3-15A0A0B4J1V0 119 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 A0A0G2JN53 185 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 CEACAM18A8MTB9 384 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 ZNF724A8MTY0 619 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 C12orf77C9JDV5 145 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 MANBAO00462 879 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 VCYO14598 125 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 ENSAO43768 121 aaKnown RBP3.81□□□□□ -1.8
HMGB1-207ENST00000468384 MFSD11O43934 449 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 ALDOBP05062 364 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 SLC6A1P30531 599 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms