RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 AQP11Q8NBQ7 271 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 OR10G2Q8NGC3 310 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 FANK1Q8TC84 345 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 SMAP2Q8WU79 429 aaPredicted RBP15.49■□□□□ 0.07
COL7A1-205ENST00000465238 KATNB1Q9BVA0 655 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 MGAT4BQ9UQ53 548 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 POFUT2Q9Y2G5 429 aa15.49■□□□□ 0.07
COL7A1-205ENST00000465238 INAFM1C9JVW0 142 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 SOD3P08294 240 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 PGA4P0DJD7 388 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 PGA3P0DJD8 388 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 ZNF26P17031 533 aaPredicted RBP15.48■□□□□ 0.07
COL7A1-205ENST00000465238 GSTM3P21266 225 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 FASP25445 335 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 SLC6A6P31641 620 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 ACTR3P61158 418 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 TNK1Q13470 666 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 KPNB1Q14974 876 aaKnown RBP15.48■□□□□ 0.07
COL7A1-205ENST00000465238 PPA1Q15181 289 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 RFX4Q33E94 735 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 DPY19L2P2Q6ZN68 376 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 ARIH2OSQ8N7S6 290 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 SYT14Q8NB59 555 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 OR1K1Q8NGR3 316 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 GTPBP3Q969Y2 492 aaKnown RBP15.48■□□□□ 0.07
COL7A1-205ENST00000465238 TSPAN32Q96QS1 320 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 PDP1Q9P0J1 537 aaPredicted RBP15.48■□□□□ 0.07
COL7A1-205ENST00000465238 IL20RAQ9UHF4 553 aa15.48■□□□□ 0.07
COL7A1-205ENST00000465238 SONP18583 2426 aaKnown RBP15.48■□□□□ 0.07
COL7A1-205ENST00000465238 DPRXA6NFQ7 191 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 ZNF99A8MXY4 864 aaPredicted RBP15.47■□□□□ 0.07
COL7A1-205ENST00000465238 QDPRP09417 244 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 FCGR1AP12314 374 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 NR2C1P13056 603 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 RPS6KA3P51812 740 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 RUNX1T1Q06455 604 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 ZSCAN26Q16670 478 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 CLEC12BQ2HXU8 276 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 GPR139Q6DWJ6 353 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 RPL13AP3Q6NVV1 102 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 ANKRD16Q6P6B7 361 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 KLHL24Q6TFL4 600 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 THSD4Q6ZMP0 1018 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 TMEM179BQ7Z7N9 219 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 PRIMA1Q86XR5 153 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 NOXO1Q8NFA2 376 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 KBTBD8Q8NFY9 601 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 OR52N5Q8NH56 324 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 BCL2L2Q92843 193 aaPredicted RBP15.47■□□□□ 0.07
COL7A1-205ENST00000465238 NEUROG1Q92886 237 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 ZNF837Q96EG3 531 aaPredicted RBP15.47■□□□□ 0.07
COL7A1-205ENST00000465238 SAMD8Q96LT4 415 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 RBP7Q96R05 134 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 GPX7Q96SL4 187 aaPredicted RBP15.47■□□□□ 0.07
COL7A1-205ENST00000465238 FEVQ99581 238 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 DGCR6LQ9BY27 220 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 MRPL13Q9BYD1 178 aaKnown RBP15.47■□□□□ 0.07
COL7A1-205ENST00000465238 OR52D1Q9H346 318 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 NRIP3Q9NQ35 241 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 SLC17A5Q9NRA2 495 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 PLCE1Q9P212 2302 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 AMDHD2Q9Y303 409 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 ADAM18Q9Y3Q7 739 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 IER3IP1Q9Y5U9 82 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 MAGED1Q9Y5V3 778 aaPredicted RBP15.47■□□□□ 0.07
COL7A1-205ENST00000465238 ATRQ13535 2644 aa15.47■□□□□ 0.07
COL7A1-205ENST00000465238 ARRDC5A6NEK1 342 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 XKRYO14609 159 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 DHHO43323 396 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 FXYD6P3P58550 94 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 UBE2NP61088 152 aaKnown RBP15.46■□□□□ 0.07
COL7A1-205ENST00000465238 MYBPC1Q00872 1141 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 CD47Q08722 323 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 ATP6AP1Q15904 470 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 HIST3H3Q16695 136 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 TBRG1Q3YBR2 411 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 HIKESHIQ53FT3 197 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 C1QTNF12Q5T7M4 302 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 LRFN4Q6PJG9 635 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 RASSF6Q6ZTQ3 369 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 OR52L1Q8NGH7 329 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 ZNF519Q8TB69 540 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 FNDC8Q8TC99 324 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 HDAC2Q92769 488 aaKnown RBP15.46■□□□□ 0.07
COL7A1-205ENST00000465238 MCHR2Q969V1 340 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 BOD1Q96IK1 185 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 Q96M85 177 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 ZNF570Q96NI8 536 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 KCNK17Q96T54 332 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 ALG12Q9BV10 488 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 IFT27Q9BW83 186 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 ZNF556Q9HAH1 456 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 CDH10Q9Y6N8 788 aa15.46■□□□□ 0.07
COL7A1-205ENST00000465238 ABCA1O95477 2261 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 A0A096LPE4 126 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 A0A1W2PPZ6 126 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 A0A1W2PR80 420 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 PPP1R3DO95685 299 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 WNT11O96014 354 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 HOXB1P14653 301 aaPredicted RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms