RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 LRGUKQ96M69 825 aa13.8□□□□□ -0.2
CUX2-202ENST00000397643 TMPRSS13Q9BYE2 586 aa13.8□□□□□ -0.2
CUX2-202ENST00000397643 TRIM15Q9C019 465 aa13.8□□□□□ -0.2
CUX2-202ENST00000397643 MS4A5Q9H3V2 200 aa13.8□□□□□ -0.2
CUX2-202ENST00000397643 EVA1AQ9H8M9 152 aa13.8□□□□□ -0.2
CUX2-202ENST00000397643 BAG5Q9UL15 447 aa13.8□□□□□ -0.2
CUX2-202ENST00000397643 ERICH4A6NGS2 130 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 ZNF99A8MXY4 864 aaPredicted RBP13.79□□□□□ -0.2
CUX2-202ENST00000397643 CIB2O75838 187 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 AHSA1O95433 338 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 ZNF682O95780 498 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 ZNF43P17038 809 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 GLRXP35754 106 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 TMEM33P57088 247 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 MRPS11P82912 194 aaKnown RBP13.79□□□□□ -0.2
CUX2-202ENST00000397643 MTX3Q5HYI7 312 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 CCDC36Q8IYA8 594 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 CLIP4Q8N3C7 705 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 GPR137CQ8N3F9 429 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 ZDHHC22Q8N966 263 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 KTI12Q96EK9 354 aaPredicted RBP13.79□□□□□ -0.2
CUX2-202ENST00000397643 RAB3IPQ96QF0 476 aaPredicted RBP13.79□□□□□ -0.2
CUX2-202ENST00000397643 OR2M2Q96R28 347 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 ZNF224Q9NZL3 707 aa13.79□□□□□ -0.2
CUX2-202ENST00000397643 SAMD4AQ9UPU9 718 aaKnown RBP13.79□□□□□ -0.2
CUX2-202ENST00000397643 TRAF3IP2O43734 574 aaPredicted RBP13.78□□□□□ -0.2
CUX2-202ENST00000397643 RRP9O43818 475 aaKnown RBP13.78□□□□□ -0.2
CUX2-202ENST00000397643 TPST1O60507 370 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 CD247P20963 164 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 RPS5P46782 204 aaKnown RBP13.78□□□□□ -0.2
CUX2-202ENST00000397643 CAPZA2P47755 286 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 CRYBA2P53672 197 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 COPZ1P61923 177 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 SELENOWP63302 87 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 MS4A2Q01362 244 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 DUSP7Q16829 419 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 PDLIM3Q53GG5 364 aaPredicted RBP13.78□□□□□ -0.2
CUX2-202ENST00000397643 LCN8Q6JVE9 175 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 CBLL1Q75N03 491 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 C1QL2Q7Z5L3 287 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 POP5Q969H6 163 aaKnown RBP13.78□□□□□ -0.2
CUX2-202ENST00000397643 SLC35B4Q969S0 331 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 SLC25A36Q96CQ1 311 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 TPD52L3Q96J77 140 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 OXGR1Q96P68 337 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 JMJD8Q96S16 334 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 SLC6A7Q99884 636 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 ZNF747Q9BV97 191 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 ZNF696Q9H7X3 374 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 DCAF13Q9NV06 445 aaKnown RBP13.78□□□□□ -0.2
CUX2-202ENST00000397643 SLC7A8Q9UHI5 535 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 POMPQ9Y244 141 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 PCDHGB1Q9Y5G3 927 aa13.78□□□□□ -0.2
CUX2-202ENST00000397643 ACOT8O14734 319 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 PPIHO43447 177 aaKnown RBP13.77□□□□□ -0.21
CUX2-202ENST00000397643 DEAF1O75398 565 aaPredicted RBP13.77□□□□□ -0.21
CUX2-202ENST00000397643 MYBPC1Q00872 1141 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 FLOT2Q14254 428 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 GSG1Q2KHT4 349 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 GLIPR1L2Q4G1C9 344 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 CYP2R1Q6VVX0 501 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 FKBP9P1Q75LS8 142 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 ZNF627Q7L945 461 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 WDFY1Q8IWB7 410 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 PIK3C3Q8NEB9 887 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 GPR32P1Q8NGA4 272 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 SUCNR1Q9BXA5 334 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 FZR1Q9UM11 496 aa13.77□□□□□ -0.21
CUX2-202ENST00000397643 M0R082 166 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 NAT2P11245 290 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 ADRA2CP18825 462 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 ATP6V1B2P21281 511 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 UBA52P62987 128 aaKnown RBP13.76□□□□□ -0.21
CUX2-202ENST00000397643 PIGFQ07326 219 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 C1orf146Q5VVC0 180 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 C20orf196Q8IYI0 205 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 TEX29Q8N6K0 151 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 ZNF417Q8TAU3 575 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 PYURFQ96I23 114 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 ZNF587Q96SQ5 575 aaPredicted RBP13.76□□□□□ -0.21
CUX2-202ENST00000397643 ARHGDIGQ99819 225 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 ZNF416Q9BWM5 594 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 RSPO3Q9BXY4 272 aaPredicted RBP13.76□□□□□ -0.21
CUX2-202ENST00000397643 ZNF665Q9H7R5 613 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 SH3GLB1Q9Y371 365 aa13.76□□□□□ -0.21
CUX2-202ENST00000397643 LOC102725191A0A1B0GVB3 256 aa13.75□□□□□ -0.21
CUX2-202ENST00000397643 AQP12BA6NM10 295 aa13.75□□□□□ -0.21
CUX2-202ENST00000397643 M0R3G1 203 aa13.75□□□□□ -0.21
CUX2-202ENST00000397643 PLPP2O43688 288 aa13.75□□□□□ -0.21
CUX2-202ENST00000397643 HPRP00739 348 aa13.75□□□□□ -0.21
CUX2-202ENST00000397643 FSHBP01225 129 aa13.75□□□□□ -0.21
CUX2-202ENST00000397643 CD79AP11912 226 aa13.75□□□□□ -0.21
CUX2-202ENST00000397643 NQO1P15559 274 aaKnown RBP13.75□□□□□ -0.21
CUX2-202ENST00000397643 MAGEB1P43366 347 aa13.75□□□□□ -0.21
CUX2-202ENST00000397643 RGS8P57771 180 aaPredicted RBP13.75□□□□□ -0.21
CUX2-202ENST00000397643 HOXC5Q00444 222 aa13.75□□□□□ -0.21
CUX2-202ENST00000397643 TUSC1Q2TAM9 212 aa13.75□□□□□ -0.21
CUX2-202ENST00000397643 IFI44LQ53G44 452 aa13.75□□□□□ -0.21
CUX2-202ENST00000397643 RANBP3LQ86VV4 465 aaPredicted RBP13.75□□□□□ -0.21
CUX2-202ENST00000397643 ZNF584Q8IVC4 421 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms