RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RNF166Q96A37 237 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 LRRC46Q96FV0 321 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 Q96M85 177 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 KRT84Q9NSB2 600 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 MRPL22Q9NWU5 206 aaKnown RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 ASB6Q9NWX5 421 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 GRHPRQ9UBQ7 328 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 WARS2Q9UGM6 360 aaKnown RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 IER3IP1Q9Y5U9 82 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 TENM4Q6N022 2769 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 KHDRBS3O75525 346 aaKnown RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 CD1AP06126 327 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 SAGP10523 405 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 CDH2P19022 906 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 MYF6P23409 242 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 HTR1FP30939 366 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 RAD23AP54725 363 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 FDX2Q6P4F2 183 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 DNM1P34Q6PK57 102 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 CXorf67Q86X51 503 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 CDC20BQ86Y33 519 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 OR6V1Q8N148 313 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 PIP4P2Q8N4L2 257 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 CBR4Q8N4T8 237 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 OR52L1Q8NGH7 329 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 OR8J1Q8NGP2 316 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 SLC25A36Q96CQ1 311 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 PRRG3Q9BZD7 231 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 FGF20Q9NP95 211 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 KCNJ16Q9NPI9 418 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 MED29Q9NX70 200 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 RAB26Q9ULW5 256 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 V9GYQ6 96 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 C16orf97H3BN30 126 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 C19orf84I3L1E1 186 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 SIAH2O43255 324 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 SPI1P17947 270 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 NOS3P29474 1203 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 EVX1P49640 407 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ROR2Q01974 943 aaKnown RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 TLE4Q04727 773 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 DEGS2Q6QHC5 323 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 RRM2BQ7LG56 351 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 GID4Q8IVV7 300 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 GLB1L2Q8IW92 636 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 SLC22A24Q8N4F4 322 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 TEX47Q8TBZ9 253 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 STMN2Q93045 179 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 TSSK6Q9BXA6 273 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF556Q9HAH1 456 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 TBC1D23Q9NUY8 699 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ADAM18Q9Y3Q7 739 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF407Q9C0G0 2248 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 KPNA4O00629 521 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 SYNGR3O43761 229 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 IGFBP1P08833 259 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 PSKH1P11801 424 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 POU2F1P14859 743 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 CTLA4P16410 223 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 PRKACGP22612 351 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ERVK-25P63136 954 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 NKX6-1P78426 367 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 POU4F2Q12837 409 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 GINS1Q14691 196 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 SLC18B1Q6NT16 456 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 PLXDC2Q6UX71 529 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 NCCRP1Q6ZVX7 275 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 PRSS45Q7RTY3 260 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF584Q8IVC4 421 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 MCEMP1Q8IX19 187 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF485Q8NCK3 441 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 IL17RDQ8NFM7 739 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 PRR7Q8TB68 274 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ST7LQ8TDW4 575 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ZNRF4Q8WWF5 429 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 FOXB1Q99853 325 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 YIPF3Q9GZM5 350 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 TOR3AQ9H497 397 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF503-AS2A6NEH8 195 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 BLOC1S5-TXNDC5H3BN57 136 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ZG16O60844 167 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 MITFO75030 526 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 WBP4O75554 376 aaKnown RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 OR6A2O95222 327 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 IFNGP01579 166 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 OPN1LWP04000 364 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 F13BP05160 661 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 QDPRP09417 244 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 CCNA2P20248 432 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 PEX2P28328 305 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ARR3P36575 388 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 HSF2Q03933 536 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 C1DQ13901 141 aaKnown RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 RSPO1Q2MKA7 263 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 CCDC92Q53HC0 331 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ENTHD1Q8IYW4 607 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF454Q8N9F8 522 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 OR51A7Q8NH64 312 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 LILRB1Q8NHL6 650 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 RASD2Q96D21 266 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms