RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ADAM18Q9Y3Q7 739 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 HEATR5AQ86XA9 2040 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 OR2M5A3KFT3 312 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 SLC35F4A4IF30 521 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 J3QKU1 62 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 CASKO14936 926 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 ARPC3O15145 178 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 ZNF208O43345 1280 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 ZNF708P17019 499 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 CAPZA2P47755 286 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 LHX2P50458 406 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 ZNF85Q03923 595 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 SELENBP1Q13228 472 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 ZNF74Q16587 644 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 PDSS1Q5T2R2 415 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 TMEM211Q6ICI0 200 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 C5orf46Q6UWT4 87 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 ESPNLQ6ZVH7 1005 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 MEIOBQ8N635 442 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 LIPHQ8WWY8 451 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 GPX7Q96SL4 187 aaPredicted RBP9.11□□□□□ -0.95
VPS53-202ENST00000389040 TSPAN10Q9H1Z9 355 aaPredicted RBP9.11□□□□□ -0.95
VPS53-202ENST00000389040 SLC6A15Q9H2J7 730 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 CALHM2Q9HA72 323 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 NRIP3Q9NQ35 241 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 TIGARQ9NQ88 270 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 RALYQ9UKM9 306 aaKnown RBP9.11□□□□□ -0.95
VPS53-202ENST00000389040 VDAC3Q9Y277 283 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 TRAPPC4Q9Y296 219 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 V9GYH0 126 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 A0A1W2PQL4 384 aaPredicted RBP9.11□□□□□ -0.95
VPS53-202ENST00000389040 CD8B2A6NJW9 211 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 E9PLN8 166 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 IDH3BO43837 385 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 RGS9O75916 674 aaPredicted RBP9.11□□□□□ -0.95
VPS53-202ENST00000389040 PTTG1O95997 202 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 CD8BP10966 210 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 PLA2G2AP14555 144 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 CD53P19397 219 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 POU3F2P20265 443 aaPredicted RBP9.11□□□□□ -0.95
VPS53-202ENST00000389040 TACR3P29371 465 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 CA7P43166 264 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 POLR2HP52434 150 aaKnown RBP9.11□□□□□ -0.95
VPS53-202ENST00000389040 ERVK-25P63136 954 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 GGTLC2Q14390 218 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 INSL4Q14641 139 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 DDI2Q5TDH0 399 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 LCN1P1Q5VSP4 162 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 EEF1A1P5Q5VTE0 462 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 C3orf33Q6P1S2 294 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 C10orf53Q8N6V4 93 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 POC5Q8NA72 575 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 POMGNT2Q8NAT1 580 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 SMAP2Q8WU79 429 aaPredicted RBP9.11□□□□□ -0.95
VPS53-202ENST00000389040 NMNAT3Q96T66 252 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 CNN2Q99439 309 aaKnown RBP9.11□□□□□ -0.95
VPS53-202ENST00000389040 SDHCQ99643 169 aaPredicted RBP9.11□□□□□ -0.95
VPS53-202ENST00000389040 VKORC1Q9BQB6 163 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 KCNN2Q9H2S1 579 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 ABCB9Q9NP78 766 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 NANSQ9NR45 359 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 SPRR3Q9UBC9 169 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 ZNF229Q9UJW7 825 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 RPH3AQ9Y2J0 694 aaPredicted RBP9.11□□□□□ -0.95
VPS53-202ENST00000389040 HIF3AQ9Y2N7 669 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 HRH3Q9Y5N1 445 aa9.11□□□□□ -0.95
VPS53-202ENST00000389040 SIRT4Q9Y6E7 314 aaPredicted RBP9.11□□□□□ -0.95
VPS53-202ENST00000389040 EXPH5Q8NEV8 1989 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 SMIM30A4D0T7 59 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 NPIPA2E9PIF3 369 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 NPIPA3F8WFD2 350 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 BLOC1S5-TXNDC5H3BN57 136 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 AQP2P41181 271 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 PER3P56645 1201 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 TAS2R43P59537 309 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 DEFA1P59665 94 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 DEFA3P59666 94 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 EGR4Q05215 589 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 LGALS3BPQ08380 585 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 PON3Q15166 354 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 IGFBP7Q16270 282 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 C4orf17Q53FE4 359 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 TMEM91Q6ZNR0 172 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 CHMP1BQ7LBR1 199 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 FGD2Q7Z6J4 655 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 DOLPP1Q86YN1 238 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 NPEPL1Q8NDH3 523 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 MOSPD2Q8NHP6 518 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 ZNF524Q96C55 264 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 RASD2Q96D21 266 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 ZMYND19Q96E35 227 aaPredicted RBP9.1□□□□□ -0.95
VPS53-202ENST00000389040 WDYHV1Q96HA8 205 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 C4orf36Q96KX1 117 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 MOGAT1Q96PD6 335 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 DDOQ99489 341 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 MIXL1Q9H2W2 232 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 SLC6A5Q9Y345 797 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 NOX1Q9Y5S8 564 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 LIPGQ9Y5X9 500 aa9.1□□□□□ -0.95
VPS53-202ENST00000389040 TEX13CA0A0J9YWL9 993 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms