RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 CD47Q08722 323 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF620Q6ZNG0 422 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF627Q7L945 461 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 ARIH2OSQ8N7S6 290 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 SAMD8Q96LT4 415 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 TMEM204Q9BSN7 226 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 EGLN3Q9H6Z9 239 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 NOX3Q9HBY0 568 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 NGBQ9NPG2 151 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 ABCA4P78363 2273 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 TEX13CA0A0J9YWL9 993 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 CENPBD1B2RD01 187 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 IMPA2O14732 288 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 ARHGEF9O43307 516 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 PPP1R3DO95685 299 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF133P52736 654 aaPredicted RBP13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 NR1H2P55055 460 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 UBE2NP61088 152 aaKnown RBP13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF704Q6ZNC4 412 aaPredicted RBP13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZDHHC13Q8IUH4 622 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 LINC00471Q8N535 108 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 KBTBD8Q8NFY9 601 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 OR10G2Q8NGC3 310 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 NEUROG1Q92886 237 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 GTPBP3Q969Y2 492 aaKnown RBP13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 ESRP2Q9H6T0 727 aaKnown RBP13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 SMURF2Q9HAU4 748 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF224Q9NZL3 707 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 GRHPRQ9UBQ7 328 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 IER3IP1Q9Y5U9 82 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 WNT11O96014 354 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 IGFBP1P08833 259 aaPredicted RBP13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 KRR1Q13601 381 aaKnown RBP13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 RFX4Q33E94 735 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 C10orf128Q5T292 105 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 FAM205BPQ63HN1 556 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 ADAM5Q6NVV9 412 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 DPY19L2P2Q6ZN68 376 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 MYPOPQ86VE0 399 aaPredicted RBP13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 LILRB1Q8NHL6 650 aaPredicted RBP13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 NIPSNAP1Q9BPW8 284 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 ALG12Q9BV10 488 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 PLA2G12AQ9BZM1 189 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 SEC61A2Q9H9S3 476 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 UBTD1Q9HAC8 227 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 TMEM38BQ9NVV0 291 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 RNF115Q9Y4L5 304 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 UGT2A1Q9Y4X1 527 aa13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 ANKRD17O75179 2603 aaKnown RBP13.15□□□□□ -0.3
SMPDL3A-201ENST00000368440 A6NIZ1 184 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 ABCD4O14678 606 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 HLA-HP01893 362 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 CD3EP07766 207 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 HOXB6P17509 224 aaKnown RBP13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 CD40P25942 277 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 SDHAP31040 664 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 CAPZA2P47755 286 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 RAP1BP61224 184 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 RAP1AP62834 184 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 SLC25A47Q6Q0C1 308 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 PTCHD4Q6ZW05 846 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 SSX8Q7RTT4 187 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 CDH24Q86UP0 819 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 SKA3Q8IX90 412 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 OR8D4Q8NGM9 314 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 FGFBP3Q8TAT2 258 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 GIPC3Q8TF64 312 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 NSMAFQ92636 917 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 NDEL1Q9GZM8 345 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 OBP2BQ9NPH6 170 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 IGHV1-18A0A0C4DH31 117 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 TP53P04637 393 aaPredicted RBP13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 CELA3BP08861 270 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 PATE4P0C8F1 98 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 SLC6A6P31641 620 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 CDAP32320 146 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 DBPQ10586 325 aaPredicted RBP13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 ZIK1Q3SY52 487 aaPredicted RBP13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 KLHL17Q6TDP4 642 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 MDP1Q86V88 176 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 SLC22A24Q8N4F4 322 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 OR5K1Q8NHB7 308 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 CNBD2Q96M20 576 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 ERMAPQ96PL5 475 aaPredicted RBP13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 FEVQ99581 238 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 SH3GL3Q99963 347 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 DGCR6LQ9BY27 220 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 B3GNT2Q9NY97 397 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 PDP1Q9P0J1 537 aaPredicted RBP13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 LRCH1Q9Y2L9 728 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 CDH10Q9Y6N8 788 aa13.14□□□□□ -0.31
SMPDL3A-201ENST00000368440 SLC22A23A1A5C7 686 aa13.13□□□□□ -0.31
SMPDL3A-201ENST00000368440 SHISA9B4DS77 424 aa13.13□□□□□ -0.31
SMPDL3A-201ENST00000368440 SOX14O95416 240 aa13.13□□□□□ -0.31
SMPDL3A-201ENST00000368440 TXNDC12O95881 172 aa13.13□□□□□ -0.31
SMPDL3A-201ENST00000368440 HOXB1P14653 301 aaPredicted RBP13.13□□□□□ -0.31
SMPDL3A-201ENST00000368440 PTAFRP25105 342 aa13.13□□□□□ -0.31
SMPDL3A-201ENST00000368440 ZNF84P51523 738 aa13.13□□□□□ -0.31
SMPDL3A-201ENST00000368440 PIGFQ07326 219 aa13.13□□□□□ -0.31
SMPDL3A-201ENST00000368440 GK3PQ14409 553 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms