RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 MRPL48Q96GC5 212 aaKnown RBP11.85□□□□□ -0.51
SQSTM1-201ENST00000360718 C7orf50Q9BRJ6 194 aaKnown RBP11.85□□□□□ -0.51
SQSTM1-201ENST00000360718 ANGPTL4Q9BY76 406 aa11.85□□□□□ -0.51
SQSTM1-201ENST00000360718 PROK2Q9HC23 129 aa11.85□□□□□ -0.51
SQSTM1-201ENST00000360718 NANSQ9NR45 359 aa11.85□□□□□ -0.51
SQSTM1-201ENST00000360718 RABL2AQ9UBK7 228 aaPredicted RBP11.85□□□□□ -0.51
SQSTM1-201ENST00000360718 RABL2BQ9UNT1 228 aa11.85□□□□□ -0.51
SQSTM1-201ENST00000360718 LAMA5O15230 3695 aa11.85□□□□□ -0.51
SQSTM1-201ENST00000360718 IGKV1D-42A0A075B6H8 117 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 SUSD5O60279 629 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 UBL3O95164 117 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 PPP1R3DO95685 299 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 P04436 131 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 HIST1H2ABP04908 130 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 CCL3P10147 92 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 SDHBP21912 280 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 STOMP27105 288 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 PYCR1P32322 319 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 ACVR1BP36896 505 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 CASRP41180 1078 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 APOBEC1P41238 236 aaKnown RBP11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 CYB561P49447 251 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 AGFG1P52594 562 aaKnown RBP11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 OR12D2P58182 307 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 ACTA2P62736 377 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 ACTG2P63267 376 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 C5orf46Q6UWT4 87 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 HIST3H2AQ7L7L0 130 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 TOMM5Q8N4H5 51 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 SNAPC3Q92966 411 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 HIST1H2ACQ93077 130 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 TNFRSF13CQ96RJ3 184 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 PPIL3Q9H2H8 161 aaKnown RBP11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 RANBP3Q9H6Z4 567 aaPredicted RBP11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 SH2D2AQ9NP31 389 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 PTTG3PQ9NZH4 202 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 VDAC3Q9Y277 283 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 HSPB11Q9Y547 144 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 CEP295Q9C0D2 2601 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 MED12Q93074 2177 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 A0A0A6YYJ9 748 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 A0A0G2JK05 382 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 C7orf66A4D0T2 115 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 A8MVM7 634 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 NKX2-8O15522 239 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 OR2T7P0C7T2 308 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 MMP15P51511 669 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 RRADP55042 308 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 OR10A3P58181 314 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 OC90Q02509 493 aaPredicted RBP11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 LGALS3BPQ08380 585 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 C19orf57Q0VDD7 668 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 ZNF74Q16587 644 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 MDGA2Q7Z553 956 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 ZNF227Q86WZ6 799 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 BEST3Q8N1M1 668 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 SYS1Q8N2H4 156 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 OR2M3Q8NG83 312 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 OR2T27Q8NH04 317 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 THAP4Q8WY91 577 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 GHSRQ92847 366 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 PHF21AQ96BD5 680 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 NXPE2Q96DL1 559 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 PGLYRP3Q96LB9 341 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 OR2M2Q96R28 347 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 MFRPQ9BY79 579 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 EMC7Q9NPA0 242 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 ZMIZ1Q9ULJ6 1067 aa11.84□□□□□ -0.51
SQSTM1-201ENST00000360718 TRAV36DV7A0A075B6V5 113 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 LRRN3E7EW58 273 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 OGG1O15527 345 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 LANCL1O43813 399 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 GATBO75879 557 aaKnown RBP11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 NDUFB2O95178 105 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 F10P00742 488 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 EGR4Q05215 589 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 FAM27D1Q5T7N8 215 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 ARSKQ6UWY0 536 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 LUZP2Q86TE4 346 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 ADGRG3Q86Y34 549 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 POMGNT2Q8NAT1 580 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 SCMH1Q96GD3 660 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 MRGPRX4Q96LA9 322 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 CMTM3Q96MX0 182 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 ABHD1Q96SE0 405 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 G3V3Y1 287 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 CD1AP06126 327 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 RPL4P36578 427 aaKnown RBP11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 MAP2K6P52564 334 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 RAG2P55895 527 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 PRPS1P60891 318 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 FOXC1Q12948 553 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 CLN3Q13286 438 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 BCL2L15Q5TBC7 163 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 CD276Q5ZPR3 534 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 ZNF782Q6ZMW2 699 aaPredicted RBP11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 WDSUB1Q8N9V3 476 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 CYB561A3Q8NBI2 242 aa11.83□□□□□ -0.52
SQSTM1-201ENST00000360718 FAM98AQ8NCA5 519 aaKnown RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms