RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 GAS2L1Q99501 681 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 PAPOLGQ9BWT3 736 aaKnown RBP17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 PLEKHM1Q9Y4G2 1056 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 NUP205Q92621 2012 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 IFITM5A6NNB3 132 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 HRO43593 1189 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 NAT1P18440 290 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 EPHA5P54756 1037 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 SRYQ05066 204 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 Q6ZSR6 202 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 ANGPTL5Q86XS5 388 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 CASD1Q96PB1 797 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 WSB2Q9NYS7 404 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 JMJD7P0C870 316 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 DCTDP32321 178 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 BAP18Q8IXM2 172 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 UPRTQ96BW1 309 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 ZNF578Q96N58 590 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 NARFLQ9H6Q4 476 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 GJE1A6NN92 205 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 PHF1O43189 567 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 SLC39A11Q8N1S5 342 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 WDR89Q96FK6 387 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 EXO1Q9UQ84 846 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 GFYI3L273 518 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 CD53P19397 219 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 LAP3P28838 519 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 RNF4P78317 190 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 ATPAF1Q5TC12 328 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 MOB3CQ70IA8 216 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 LFNGQ8NES3 379 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 IFT22Q9H7X7 185 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 POMT2Q9UKY4 750 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 CCDC85CA6NKD9 419 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 SUSD5O60279 629 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 NME2P1O60361 137 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 RGS11O94810 467 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 ACHEP22303 614 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 MSMO1Q15800 293 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 DUSP5Q16690 384 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 AFMIDQ63HM1 303 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 GCDHQ92947 438 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 ATF6BQ99941 703 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 FN3KRPQ9HA64 309 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 SIRT5Q9NXA8 310 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 KIR2DS5A0A0G2JLQ3 304 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 A0A0G2JNG1 304 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 PRSS38A1L453 326 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 TMEM235A6NFC5 223 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 KIR2DS3K7RE56 304 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 CYTIPO60759 359 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 MT-ND4LP03901 98 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 UBE2NP61088 152 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 BDH1Q02338 343 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 KIR2DS5Q14953 304 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 TMEM64Q6YI46 380 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 RDH10Q8IZV5 341 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 ZNF439Q8NDP4 499 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 TAAR8Q969N4 342 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 ULBP2Q9BZM5 246 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 SCPEP1Q9HB40 452 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 MED16Q9Y2X0 877 aa17.95■□□□□ 0.46
CCDC88B-202ENST00000356786 ZFP92A6NM28 416 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 UMAD1C9J7I0 102 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 CD79AP11912 226 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 TM4SF4P48230 202 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 MELKQ14680 651 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 OR52W1Q6IF63 320 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 SLC43A2Q8N370 569 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 NDRG3Q9UGV2 375 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 MGMTP16455 207 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 MSR1P21757 451 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 HBG1P69891 147 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 HBG2P69892 147 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 ZNF239Q16600 458 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 RNF212Q495C1 297 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 CPEB2Q7Z5Q1 589 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 ZNF808Q8N4W9 903 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 APH1BQ8WW43 257 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 FGF20Q9NP95 211 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 KLK11Q9UBX7 282 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 KIAA1551Q9HCM1 1747 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 ASPDHA6ND91 283 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 CHRM2P08172 466 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 NID1P14543 1247 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 PYCR3Q53H96 274 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 GLIPR1L1Q6UWM5 242 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 SEMA4CQ9C0C4 833 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 DCTN6O00399 190 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 ZNF354AO60765 605 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 SOD1P00441 154 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 HPNP05981 417 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 RFX2P48378 723 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 RAB11AP62491 216 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 SRPXP78539 464 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 MAT1AQ00266 395 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 GLYR1Q49A26 553 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 PHLDA2Q53GA4 152 aa17.94■□□□□ 0.46
CCDC88B-202ENST00000356786 OR9K2Q8NGE7 335 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms