RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ZNF730Q6ZMV8 503 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 HDDC2Q7Z4H3 204 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 RNF113BQ8IZP6 322 aaKnown RBP15.86■□□□□ 0.13
CLN3-202ENST00000355477 ZCCHC24Q8N2G6 241 aaKnown RBP15.86■□□□□ 0.13
CLN3-202ENST00000355477 CLDN22Q8N7P3 220 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 OR13C2Q8NGS9 318 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 C10orf105Q8TEF2 133 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 FAM168AQ92567 244 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 C7orf34Q96L11 122 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 KCNK17Q96T54 332 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 NDUFAF4Q9P032 175 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 RPS6KA6Q9UK32 745 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 ZNF346Q9UL40 294 aaKnown RBP15.86■□□□□ 0.13
CLN3-202ENST00000355477 ARL2BPQ9Y2Y0 163 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 UGT2A1Q9Y4X1 527 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 MALRD1Q5VYJ5 2156 aa15.86■□□□□ 0.13
CLN3-202ENST00000355477 SH3PXD2BA1X283 911 aa15.85■□□□□ 0.13
CLN3-202ENST00000355477 TCN1P20061 433 aaPredicted RBP15.85■□□□□ 0.13
CLN3-202ENST00000355477 CDAP32320 146 aa15.85■□□□□ 0.13
CLN3-202ENST00000355477 MSX2P35548 267 aaPredicted RBP15.85■□□□□ 0.13
CLN3-202ENST00000355477 GPR4P46093 362 aa15.85■□□□□ 0.13
CLN3-202ENST00000355477 ZNF84P51523 738 aa15.85■□□□□ 0.13
CLN3-202ENST00000355477 CTXN1P60606 82 aa15.85■□□□□ 0.13
CLN3-202ENST00000355477 RPL27P61353 136 aaKnown RBP15.85■□□□□ 0.13
CLN3-202ENST00000355477 SLC16A14Q7RTX9 510 aa15.85■□□□□ 0.13
CLN3-202ENST00000355477 OAFQ86UD1 273 aa15.85■□□□□ 0.13
CLN3-202ENST00000355477 CDK20Q8IZL9 346 aa15.85■□□□□ 0.13
CLN3-202ENST00000355477 LRRC18Q8N456 261 aa15.85■□□□□ 0.13
CLN3-202ENST00000355477 SLC7A13Q8TCU3 470 aa15.85■□□□□ 0.13
CLN3-202ENST00000355477 RNF121Q9H920 327 aa15.85■□□□□ 0.13
CLN3-202ENST00000355477 CMAHPQ9Y471 501 aa15.85■□□□□ 0.13
CLN3-202ENST00000355477 VSTM5A8MXK1 200 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 DIRAS1O95057 198 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 FARS2O95363 451 aaKnown RBP15.84■□□□□ 0.13
CLN3-202ENST00000355477 IGHMP01871 453 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 MMP7P09237 267 aaPredicted RBP15.84■□□□□ 0.13
CLN3-202ENST00000355477 CCL2P13500 99 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 ZNF26P17031 533 aaPredicted RBP15.84■□□□□ 0.13
CLN3-202ENST00000355477 GLRXP35754 106 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 PPOXP50336 477 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 VLDLRP98155 873 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 CD47Q08722 323 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 TAF11Q15544 211 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 FXNQ16595 210 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 NRN1LQ496H8 165 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 PODNL1Q6PEZ8 512 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 SLC25A47Q6Q0C1 308 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 TMPRSS11FQ6ZWK6 438 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 CYP4Z1Q86W10 505 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 PAQR4Q8N4S7 273 aaPredicted RBP15.84■□□□□ 0.13
CLN3-202ENST00000355477 ZNF519Q8TB69 540 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 NSMAFQ92636 917 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 LRRC37BQ96QE4 947 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 TSPAN32Q96QS1 320 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 MRPL37Q9BZE1 423 aaKnown RBP15.84■□□□□ 0.13
CLN3-202ENST00000355477 ANKRD19PQ9H560 264 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 GORASP2Q9H8Y8 452 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 STX18Q9P2W9 335 aaKnown RBP15.84■□□□□ 0.13
CLN3-202ENST00000355477 CD300AQ9UGN4 299 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 TAGLN3Q9UI15 199 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 FBXL3Q9UKT7 428 aa15.84■□□□□ 0.13
CLN3-202ENST00000355477 ENTPD5O75356 428 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 H1F0P07305 194 aaKnown RBP15.83■□□□□ 0.12
CLN3-202ENST00000355477 HSD17B1P14061 328 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 SLC25A16P16260 332 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 SLC9A3P48764 834 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 MRPS34P82930 218 aaKnown RBP15.83■□□□□ 0.12
CLN3-202ENST00000355477 LOXL1Q08397 574 aaPredicted RBP15.83■□□□□ 0.12
CLN3-202ENST00000355477 SLC36A2Q495M3 483 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 IQCCQ4KMZ1 466 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 TMEM53Q6P2H8 277 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 PGAM4Q8N0Y7 254 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 SLC30A7Q8NEW0 376 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 MRPL24Q96A35 216 aaKnown RBP15.83■□□□□ 0.12
CLN3-202ENST00000355477 NABP1Q96AH0 204 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 CDRT15Q96T59 188 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 SIAEQ9HAT2 523 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 SMURF2Q9HAU4 748 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 SAMD4AQ9UPU9 718 aaKnown RBP15.83■□□□□ 0.12
CLN3-202ENST00000355477 SPEF1Q9Y4P9 236 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 FKBP7Q9Y680 259 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 V9GYQ6 96 aa15.83■□□□□ 0.12
CLN3-202ENST00000355477 TRBV4-1A0A0J9YWV2 114 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 A0A1W2PRQ8 180 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 VWC2LB2RUY7 222 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 CD5LO43866 347 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 ADRA2AP08913 450 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 CSF3P09919 207 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 RHCEP18577 417 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 PDLIM4P50479 330 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 ERVK-25P63136 954 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 PPP2R2BQ00005 443 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 GALK2Q01415 458 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 DGCR6Q14129 220 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 SEC23BQ15437 767 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 SGCAQ16586 387 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 ANKDD1AQ495B1 522 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 ZBED5Q49AG3 693 aa15.82■□□□□ 0.12
CLN3-202ENST00000355477 GKAP1Q5VSY0 366 aaPredicted RBP15.82■□□□□ 0.12
CLN3-202ENST00000355477 RRM2BQ7LG56 351 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms