RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SURF4O15260 269 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 TRAF3IP2O43734 574 aaPredicted RBP8.17□□□□□ -1.1
USP4-202ENST00000351842 PMS2P2O95744 297 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 RENP00797 406 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 UQCRC1P31930 480 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 MFSD13AQ14CX5 517 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 NEDD8Q15843 81 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 ACSF3Q4G176 576 aaPredicted RBP8.17□□□□□ -1.1
USP4-202ENST00000351842 GTF2IRD2BQ6EKJ0 949 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 DPY19L2P2Q6ZN68 376 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 GTF2IRD2Q86UP8 949 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 GPR137CQ8N3F9 429 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 HRASLS5Q96KN8 279 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 OXGR1Q96P68 337 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 PSD2Q9BQI7 771 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 WDR76Q9H967 626 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 CENPMQ9NSP4 180 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 CLN6Q9NWW5 311 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 ARID1AO14497 2285 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 LRRTM2O43300 516 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 TPPPO94811 219 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 FADS2O95864 444 aaKnown RBP8.16□□□□□ -1.1
USP4-202ENST00000351842 SDHAP31040 664 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 GUCA1AP43080 201 aaPredicted RBP8.16□□□□□ -1.1
USP4-202ENST00000351842 ARPC4P59998 168 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 GFOD2Q3B7J2 385 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 SLC7A6Q92536 515 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 PTP4A1Q93096 173 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 ADGRG7Q96K78 797 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 RBP7Q96R05 134 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 TXNIPQ9H3M7 391 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 MARCH7Q9H992 704 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 NRIP3Q9NQ35 241 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 SLC7A10Q9NS82 523 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 NDRG4Q9ULP0 352 aaKnown RBP8.16□□□□□ -1.1
USP4-202ENST00000351842 AQP7O14520 342 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 RPP14O95059 124 aaKnown RBP8.16□□□□□ -1.1
USP4-202ENST00000351842 IGHG1P01857 330 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 CASP6P55212 293 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 GALK2Q01415 458 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 RBPJQ06330 500 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 CDK5R2Q13319 367 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 MAD2L1BPQ15013 274 aaPredicted RBP8.16□□□□□ -1.1
USP4-202ENST00000351842 CEACAM16Q2WEN9 425 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 ZNF362Q5T0B9 420 aaPredicted RBP8.16□□□□□ -1.1
USP4-202ENST00000351842 DPY19L4Q7Z388 723 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 PXKQ7Z7A4 578 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 RFLNBQ8N5W9 214 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 ZFP41Q8N8Y5 198 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 THEM6Q8WUY1 208 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 OIT3Q8WWZ8 545 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 APH1AQ96BI3 265 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 RDH12Q96NR8 316 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 CDADC1Q9BWV3 514 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 TRAPPC4Q9Y296 219 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 FAM215AQ9Y5M1 114 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 TOXO94900 526 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 IGHG3P01860 377 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 CCL2P13500 99 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 DAP3P51398 398 aaKnown RBP8.16□□□□□ -1.1
USP4-202ENST00000351842 RPS4XP62701 263 aaKnown RBP8.16□□□□□ -1.1
USP4-202ENST00000351842 CDK5Q00535 292 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 ZNF691Q5VV52 312 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 SLX4IPQ5VYV7 408 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 STX19Q8N4C7 294 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 OR52N5Q8NH56 324 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 TMIGD2Q96BF3 282 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 GABARAPL3Q9BY60 117 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 C12orf10Q9HB07 376 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 QPCTLQ9NXS2 382 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 ENOPH1Q9UHY7 261 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 IKZF2Q9UKS7 526 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 NOX1Q9Y5S8 564 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 TENM4Q6N022 2769 aa8.16□□□□□ -1.1
USP4-202ENST00000351842 KMT2BQ9UMN6 2715 aaPredicted RBP8.16□□□□□ -1.1
USP4-202ENST00000351842 CSMD2Q7Z408 3487 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 PRSS37A4D1T9 235 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 ZG16O60844 167 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 WBP4O75554 376 aaKnown RBP8.15□□□□□ -1.1
USP4-202ENST00000351842 INHBBP09529 407 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 TMIGD3P0DMS9 266 aaPredicted RBP8.15□□□□□ -1.1
USP4-202ENST00000351842 CD79AP11912 226 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 NR4A1P22736 598 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 ISL1P61371 349 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 ADAM8P78325 824 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 DCTN2Q13561 401 aaKnown RBP8.15□□□□□ -1.1
USP4-202ENST00000351842 HYAL4Q2M3T9 481 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 DMRTC1Q5HYR2 192 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 RTL6Q6ICC9 239 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 CROCCP3Q8IVE0 287 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 ZIC4Q8N9L1 334 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 SETD9Q8NE22 299 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 OR8J1Q8NGP2 316 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 RNFT2Q96EX2 444 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 NDEL1Q9GZM8 345 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 PCDHGB6Q9Y5F9 930 aa8.15□□□□□ -1.1
USP4-202ENST00000351842 HMGN1P05114 100 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 YES1P07947 543 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 SLC2A1P11166 492 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 SPI1P17947 270 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms