RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 APLNRP35414 380 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 IDH3AP50213 366 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 TAS2R40P59535 323 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ERVS71-1P61550 626 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC35A1P78382 337 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CATR1Q13166 79 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CNN3Q15417 329 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ZNF787Q6DD87 383 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 RTL6Q6ICC9 239 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 TRAT1Q6PIZ9 186 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 OR6V1Q8N148 313 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 TMEM102Q8N9M5 508 aaPredicted RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 OR10P1Q8NGE3 313 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 OR1J2Q8NGS2 313 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ZNF430Q9H8G1 570 aaPredicted RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 DYNLRB1Q9NP97 96 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 YAE1D1Q9NRH1 226 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 FOXJ3Q9UPW0 622 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 PRELID3BQ9Y3B1 194 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CER1O95813 267 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CSNK1DP48730 415 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CSNK1EP49674 416 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CCR8P51685 355 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CNN1P51911 297 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 KLF3P57682 345 aaPredicted RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 EDDM3AQ14507 147 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 BSXQ3C1V8 233 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 DMRTC1Q5HYR2 192 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ANKRD16Q6P6B7 361 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 OR5AS1Q8N127 324 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 OR5D14Q8NGL3 314 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 OR2Y1Q8NGV0 311 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 OR4C3Q8NH37 302 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 TFAP2CQ92754 450 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 RAB24Q969Q5 203 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 TMEM230Q96A57 120 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 PTX4Q96A99 478 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 KTI12Q96EK9 354 aaPredicted RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 TIMD4Q96H15 378 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 LCORQ96JN0 433 aaPredicted RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 LINC00470Q9BZP3 86 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ZDHHC2Q9UIJ5 367 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 VWA7Q9Y334 891 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 LOXL2Q9Y4K0 774 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 PREX2Q70Z35 1606 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 DUXBA0A1W2PPF3 345 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC16A6O15403 523 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 FGF19O95750 216 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ZNF8P17098 575 aaPredicted RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 IL13P35225 146 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 PPP1CAP62136 330 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 RBMS2Q15434 407 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CD226Q15762 336 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 OR2T5Q6IEZ7 315 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 TMEM184AQ6ZMB5 413 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 MOB3CQ70IA8 216 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 DEFB128Q7Z7B8 93 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 EID2Q8N6I1 236 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC26A10Q8NG04 563 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 OR2T29Q8NH02 315 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ZNF480Q8WV37 535 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 TCTN2Q96GX1 697 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 SRMSQ9H3Y6 488 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ISG20L2Q9H9L3 353 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 TMSB15BA0A087X1C1 80 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 SNNO75324 88 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 OR8G3PP0DMU2 310 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 ADCYAP1R1P41586 468 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 NKX2-1P43699 371 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 STC1P52823 247 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 SOX8P57073 446 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 HLXQ14774 488 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC22A24Q8N4F4 322 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 ZCCHC9Q8N567 271 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 SYT14Q8NB59 555 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 OR6M1Q8NGM8 313 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 GABARAPL3Q9BY60 117 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 GPR62Q9BZJ7 368 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC52A2Q9HAB3 445 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 FKBP11Q9NYL4 201 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 GNG12Q9UBI6 72 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 ERGP11308 486 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 CD44P16070 742 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 FOXK2Q01167 660 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 MYBPHQ13203 477 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 KEAP1Q14145 624 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 DECR1Q16698 335 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 TSTD2Q5T7W7 516 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 C1orf122Q6ZSJ8 110 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 SYT9Q86SS6 491 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 C12orf29Q8N999 325 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 TSLPQ969D9 159 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 LGALS12Q96DT0 336 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 NSUN5Q96P11 429 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 GPRC5CQ9NQ84 441 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 EXOSC3Q9NQT5 275 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 VPS29Q9UBQ0 182 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 TRAV8-4A0A0B4J246 113 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 M0QZ24 198 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 MAN2B1O00754 1011 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms