RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 KIR2DS1A0A191URI9 304 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 KIR2DS4P43632 304 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 ERHP84090 104 aaKnown RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 LSAMPQ13449 338 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 KIR2DS1Q14954 304 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 AVPI1Q5T686 147 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 PLXDC2Q6UX71 529 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 H1FNTQ75WM6 255 aaPredicted RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 LMNTD1Q8N9Z9 388 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 OR2AE1Q8NHA4 323 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 NKX2-5P52952 324 aaPredicted RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 GLYATL3Q5SZD4 288 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 FAM162BQ5T6X4 162 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 C9orf135Q5VTT2 229 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 KCNRGQ8N5I3 272 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 TMEM217Q8N7C4 229 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 GGHQ92820 318 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 S1PR3Q99500 378 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 LIN7CQ9NUP9 197 aaKnown RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 ANKRD31Q8N7Z5 1873 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 ACACBO00763 2458 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 UBL3O95164 117 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 MT-ND4LP03901 98 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 ADRA2CP18825 462 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 OR8G1Q15617 311 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 PARS2Q7L3T8 475 aaKnown RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 FAM185AQ8N0U4 392 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 OR2T11Q8NH01 316 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 GOT1L1Q8NHS2 421 aaPredicted RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 SORT1Q99523 831 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 ZNF251Q9BRH9 671 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 NOX4Q9NPH5 578 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 TREX1Q9NSU2 369 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 RNF150Q9ULK6 438 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 LAMP3Q9UQV4 416 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 THBS1P07996 1170 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 FABP6P51161 128 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 FXNQ16595 210 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 DOK3Q7L591 496 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 TTC9BQ8N6N2 239 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 TOX2Q96NM4 488 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 PADI1Q9ULC6 663 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 PIK3C2AO00443 1686 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 GALR2O43603 387 aaPredicted RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 GLCEO94923 617 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 APOBEC1P41238 236 aaKnown RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 GTF2H4Q92759 462 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 SEMA4CQ9C0C4 833 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 GSTO2Q9H4Y5 243 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 GMPR2Q9P2T1 348 aaKnown RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 MEIS3P2A8K0S8 358 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 MAGEB4O15481 346 aaPredicted RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 GM2AP17900 193 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 RGRP47804 291 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 LRRTM3Q86VH5 581 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 A0A1B0GX78 115 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 ZNF865P0CJ78 1059 aaPredicted RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 SMIM17P0DL12 118 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 OR8G3PP0DMU2 310 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 GIPRP48546 466 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 ZNF836Q6ZNA1 936 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 LMO3Q8TAP4 145 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 PHYHIPQ92561 330 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 SLC22A12Q96S37 553 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 SLC25A21Q9BQT8 299 aaPredicted RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 MKRN2Q9H000 416 aaKnown RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 OR52A1Q9UKL2 312 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 ACTL7AQ9Y615 435 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 PTGESO14684 152 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 AGFG1P52594 562 aaKnown RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 NTHL1P78549 312 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 GTF2H5Q6ZYL4 71 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 GON7Q9BXV9 100 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 C20orf85Q9H1P6 137 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 MTCH1Q9NZJ7 389 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 PPP1R2P9O14990 202 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 HMGN2P05204 90 aaKnown RBP8.61□□□□□ -1.03
CUX1-201ENST00000292535 CLINT1Q14677 625 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 JAM3Q9BX67 310 aa8.61□□□□□ -1.03
CUX1-201ENST00000292535 TMEM189-UBE2V1I3L0A0 370 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 HSF1Q00613 529 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 ACOT6Q3I5F7 207 aaPredicted RBP8.6□□□□□ -1.03
CUX1-201ENST00000292535 TIGITQ495A1 244 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 SLC35D2Q76EJ3 337 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 TCTE3Q8IZS6 198 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 OR5D18Q8NGL1 313 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 GAR1Q9NY12 217 aaKnown RBP8.6□□□□□ -1.03
CUX1-201ENST00000292535 GPX3P22352 226 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 TSPAN31Q12999 210 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 OR10K1Q8NGX5 313 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 TSLPQ969D9 159 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 BORCS6Q96GS4 357 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 MED18Q9BUE0 208 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 ERVMER34-1Q9H9K5 563 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 PROCRQ9UNN8 238 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 TAF1P21675 1872 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 TRBV4-1A0A0J9YWV2 114 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 TMEM72A0PK05 275 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 SRMP19623 302 aa8.6□□□□□ -1.03
CUX1-201ENST00000292535 FOXK2Q01167 660 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms