RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 ADPRMQ3LIE5 342 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 CEP55Q53EZ4 464 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 HSP90AA5PQ58FG0 334 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 AGBL2Q5U5Z8 902 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 LIPNQ5VXI9 398 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 CYB5R2Q6BCY4 276 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 ACSM5Q6NUN0 579 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 LEG1Q6P5S2 330 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 CASC1Q6TDU7 716 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 RBM43Q6ZSC3 357 aaKnown RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 RNF165Q6ZSG1 346 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 TPGS1Q6ZTW0 290 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 C1orf186Q6ZWK4 172 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 DPY19L4Q7Z388 723 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 C16orf62Q7Z3J2 963 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 FAM220AQ7Z4H9 259 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 KIAA1328Q86T90 577 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 ACOT1Q86TX2 421 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 TMEM135Q86UB9 458 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 PPP1R27Q86WC6 154 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 SERPINA9Q86WD7 417 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 TMEM17Q86X19 198 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 BBS7Q8IWZ6 715 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 UBALD2Q8IYN6 164 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 RNF148Q8N7C7 305 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 MRPL43Q8N983 215 aaKnown RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 Q8N9L7 120 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 FAM71CQ8NEG0 241 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 OR5B17Q8NGF7 314 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 OR8H1Q8NGG4 311 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 OR56B1Q8NGI3 324 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 OR51G2Q8NGK0 314 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 OR52K2Q8NGK3 314 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 OR52I1Q8NGK6 324 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 OR6K2Q8NGY2 324 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 M1APQ8TC57 530 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 PNPT1Q8TCS8 783 aaKnown RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 AENQ8WTP8 325 aaKnown RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 NAT14Q8WUY8 206 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 DNAJA4Q8WW22 397 aaPredicted RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 TCTEX1D2Q8WW35 142 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 PIGCQ92535 297 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 UCN3Q969E3 161 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 IL22RA2Q969J5 263 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 ADIPOR1Q96A54 375 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 SLC25A36Q96CQ1 311 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 TMEM101Q96IK0 257 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 CEP170P1Q96L14 293 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 PGLYRP4Q96LB8 373 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 SAMD8Q96LT4 415 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 FAM111AQ96PZ2 611 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 MBOAT4Q96T53 435 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 ATP6V0BQ99437 205 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 TXN2Q99757 166 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 GAL3ST1Q99999 423 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 MRPL45Q9BRJ2 306 aaKnown RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 SPXQ9BT56 116 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 HES7Q9BYE0 225 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 SLC25A39Q9BZJ4 359 aaPredicted RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 MAGT1Q9H0U3 335 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 VCXQ9H320 206 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 TCEAL2Q9H3H9 227 aaPredicted RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 PPDPFQ9H3Y8 114 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 GPN2Q9H9Y4 310 aaPredicted RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 PATZ1Q9HBE1 687 aaKnown RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 APMAPQ9HDC9 416 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 TMEM9BQ9NQ34 198 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 ZNF331Q9NQX6 463 aaPredicted RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 DDX19AQ9NUU7 478 aaKnown RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 SOHLH2Q9NX45 425 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 MRPL39Q9NYK5 338 aaKnown RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 COX16Q9P0S2 106 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 GCNT4Q9P109 453 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 ONECUT1Q9UBC0 465 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 EPS15L1Q9UBC2 864 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 GALPQ9UBC7 116 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 LCMT1Q9UIC8 334 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 SH3BGRL2Q9UJC5 107 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 RAB23Q9ULC3 237 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 ODF2LQ9ULJ1 636 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 FOXJ3Q9UPW0 622 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 SCML2Q9UQR0 700 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 Q9Y3F1 56 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 SNX10Q9Y5X0 201 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 MRPS18BQ9Y676 258 aaKnown RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 CDH10Q9Y6N8 788 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.73□□□□□ -2.291e-6■■■□□ 18.1
SMARCB1-209ENST00000635578 ITPR3Q14573 2671 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 WNK2Q9Y3S1 2297 aa0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 UBR5O95071 2799 aaPredicted RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 SMG1Q96Q15 3661 aaKnown RBP0.73□□□□□ -2.29
SMARCB1-209ENST00000635578 LRRK2Q5S007 2527 aa0.72□□□□□ -2.29
SMARCB1-209ENST00000635578 USF3Q68DE3 2245 aa0.72□□□□□ -2.29
SMARCB1-209ENST00000635578 UBE4BO95155 1302 aa0.72□□□□□ -2.29
SMARCB1-209ENST00000635578 DMXL2Q8TDJ6 3036 aa0.72□□□□□ -2.29
SMARCB1-209ENST00000635578 FLNCQ14315 2725 aa0.72□□□□□ -2.29
SMARCB1-209ENST00000635578 ACANP16112 2415 aa0.72□□□□□ -2.29
SMARCB1-209ENST00000635578 IGKV2-28A0A075B6P5 120 aa0.72□□□□□ -2.29
SMARCB1-209ENST00000635578 IGHV1OR15-1A0A075B7D0 117 aa0.72□□□□□ -2.29
SMARCB1-209ENST00000635578 IGHV7-81A0A0B4J1V7 117 aa0.72□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms