RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 C4orf47A7E2U8 309 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 SNRPGP15A8MWD9 76 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 KCNJ13O60928 360 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 CBX7O95931 251 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 MYOGP15173 224 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 ZNF20P17024 532 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 SLC2A5P22732 501 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 NTSR1P30989 418 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 BTG2P78543 158 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 HHEXQ03014 270 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 B3GNTL1Q67FW5 361 aaPredicted RBP11.49□□□□□ -0.57
LIG1-221ENST00000613670 SLC16A9Q7RTY1 509 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 BADQ92934 168 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 ZNF764Q96H86 408 aaPredicted RBP11.49□□□□□ -0.57
LIG1-221ENST00000613670 HRH4Q9H3N8 390 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 SHPKQ9UHJ6 478 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 KCNE5Q9UJ90 142 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 KCNG2Q9UJ96 466 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 PCDHGA9Q9Y5G4 932 aaKnown RBP11.49□□□□□ -0.57
LIG1-221ENST00000613670 ENTPD2Q9Y5L3 495 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 ETV7Q9Y603 341 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 GGT3PA6NGU5 568 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 C17orf105B2RV13 164 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 OGG1O15527 345 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 SCGB1D2O95969 90 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 UBBP0CG47 229 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 UBCP0CG48 685 aaKnown RBP11.49□□□□□ -0.57
LIG1-221ENST00000613670 NANOS3P60323 173 aaKnown RBP11.49□□□□□ -0.57
LIG1-221ENST00000613670 PPP2CBP62714 309 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 PPP2CAP67775 309 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 ZNF626Q68DY1 528 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 ANKRD33Q7Z3H0 272 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 NAXEQ8NCW5 288 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 OR2G2Q8NGZ5 317 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 KISS1RQ969F8 398 aaPredicted RBP11.49□□□□□ -0.57
LIG1-221ENST00000613670 TOX2Q96NM4 488 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 TMEM231Q9H6L2 316 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 WDR76Q9H967 626 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 PRODH2Q9UF12 536 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 PLXNA3P51805 1871 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 A0A1B0GV50 99 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 OR5H14A6NHG9 310 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 TMEM212A6NML5 194 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 LILRB3O75022 631 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 H2BFMP0C1H6 154 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 PEBP1P30086 187 aaKnown RBP11.48□□□□□ -0.57
LIG1-221ENST00000613670 CDKN2AP42771 156 aaKnown RBP11.48□□□□□ -0.57
LIG1-221ENST00000613670 MED25Q71SY5 747 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 GLRX5Q86SX6 157 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 CDH26Q8IXH8 852 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 GABRG1Q8N1C3 465 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 ZSCAN1Q8NBB4 408 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 TMEM52Q8NDY8 209 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 OR4D10Q8NGI6 311 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 ASB16Q96NS5 453 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 PHB2Q99623 299 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 FAM83CQ9BQN1 747 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 TINAGL1Q9GZM7 467 aaPredicted RBP11.48□□□□□ -0.57
LIG1-221ENST00000613670 ZNF768Q9H5H4 540 aaKnown RBP11.48□□□□□ -0.57
LIG1-221ENST00000613670 ANKRD20A5PA0PJZ0 165 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 NPIPA5E9PKD4 350 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 NMBP08949 121 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 SLC35E2P0CK97 266 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 HTR2CP28335 458 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 RPS27AP62979 156 aaKnown RBP11.48□□□□□ -0.57
LIG1-221ENST00000613670 UBA52P62987 128 aaKnown RBP11.48□□□□□ -0.57
LIG1-221ENST00000613670 FAM76BQ5HYJ3 339 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 WBP2NLQ6ICG8 309 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 Q6ZSR6 202 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 CHST6Q9GZX3 395 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 GPR160Q9UJ42 338 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 ZNF223Q9UK11 482 aaPredicted RBP11.48□□□□□ -0.57
LIG1-221ENST00000613670 NPIPA1Q9UND3 350 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 EDARQ9UNE0 448 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 A0A0J9YY10 115 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 HCKP08631 526 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 PNMTP11086 282 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 IL9P15248 144 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 CAPZA1P52907 286 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 PRMT2P55345 433 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 UBE2IP63279 158 aaKnown RBP11.48□□□□□ -0.57
LIG1-221ENST00000613670 OR7A5Q15622 319 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 TTLL10Q6ZVT0 673 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 MARCH3Q86UD3 253 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 MCATQ8IVS2 390 aaKnown RBP11.48□□□□□ -0.57
LIG1-221ENST00000613670 LHFPL5Q8TAF8 219 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 C2orf42Q9NWW7 574 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 OPN4Q9UHM6 478 aa11.48□□□□□ -0.57
LIG1-221ENST00000613670 GLSO94925 669 aaPredicted RBP11.47□□□□□ -0.57
LIG1-221ENST00000613670 OR4E1P0C645 316 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 GABRA1P14867 456 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 ARRB1P49407 418 aaPredicted RBP11.47□□□□□ -0.57
LIG1-221ENST00000613670 NR0B1P51843 470 aaKnown RBP11.47□□□□□ -0.57
LIG1-221ENST00000613670 SMCO1Q147U7 214 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 DCAF12L2Q5VW00 463 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 ZNF425Q6IV72 752 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 ZNF585AQ6P3V2 769 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 LINC00346Q8IVM7 164 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 OR4S1Q8NGB4 309 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 OR51A4Q8NGJ6 313 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms