RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	RPS6	P62753	249 aa	Known RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	ACY1	Q03154	408 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	MGAT3	Q09327	533 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	INCA1	Q0VD86	236 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	PEX6	Q13608	980 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	EIF2B1	Q14232	305 aa	Known RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	SLC5A12	Q1EHB4	618 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	MICB	Q29980	383 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	SNAI3	Q3KNW1	292 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	HES5	Q5TA89	166 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TIGD3	Q6B0B8	471 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF773	Q6PK81	442 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TMEM107	Q6UX40	140 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	C19orf35	Q6ZS72	473 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	C9orf139	Q6ZV77	190 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	GPRIN3	Q6ZVF9	776 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	STXBP4	Q6ZWJ1	553 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	MOB2	Q70IA6	237 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	EIF3M	Q7L2H7	374 aa	Known RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF571	Q7Z3V5	609 aa	Predicted RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	MOB3B	Q86TA1	216 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	SLC13A5	Q86YT5	568 aa	Predicted RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	CCDC71	Q8IV32	467 aa	Predicted RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	DEFB107A	Q8IZN7	70 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	C4orf33	Q8N1A6	199 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	OR1B1	Q8NGR6	318 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	OR52N1	Q8NH53	320 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	RHOXF1	Q8NHV9	184 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TBCK	Q8TEA7	893 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	ZFP90	Q8TF47	636 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	NUDCD2	Q8WVJ2	157 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TOP1MT	Q969P6	601 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	DUS3L	Q96G46	650 aa	Known RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TIMD4	Q96H15	378 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	LYZL4	Q96KX0	146 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	GLT1D1	Q96MS3	346 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	SERPINB11	Q96P15	392 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TECTB	Q96PL2	329 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	SLC30A2	Q9BRI3	323 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	SEC22C	Q9BRL7	303 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TRIM62	Q9BVG3	475 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TEKT3	Q9BXF9	490 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	SLC19A3	Q9BZV2	496 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	NAA50	Q9GZZ1	169 aa	Known RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	NIPAL2	Q9H841	368 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	NMUR1	Q9HB89	426 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	ESM1	Q9NQ30	184 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TMEM216	Q9P0N5	145 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	RAB23	Q9ULC3	237 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	ALG6	Q9Y672	507 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	ALS2	Q96Q42	1657 aa		4.09	□□□□□ -1.76
SS18-223	ENST00000583595	THSD7A	Q9UPZ6	1657 aa		4.09	□□□□□ -1.76
SS18-223	ENST00000583595	SPEF2	Q9C093	1822 aa		4.09	□□□□□ -1.76
SS18-223	ENST00000583595	EP400	Q96L91	3159 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	IGHV4-4	A0A075B6R2	117 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	PPIAL4E	A0A075B759	164 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595		A0A1W2PNV4	684 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	PRR23A	A6NEV1	266 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	ARGFX	A6NJG6	315 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	C2orf74	A8MZ97	194 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	SLCO1B7	G3V0H7	640 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595		I3L521	148 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	HAS3	O00219	553 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	TFEC	O14948	347 aa	Predicted RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	LRRC37A3	O60309	1634 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	UGT2B11	O75310	529 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	NIPSNAP2	O75323	286 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	TRIM3	O75382	744 aa	Predicted RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	SCO1	O75880	301 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	NFASC	O94856	1347 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	FTH1	P02794	183 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	IL6	P05231	212 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	S100A9	P06702	114 aa	Known RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	RGPD1	P0DJD0	1748 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	PPIAL4F	P0DN26	164 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	PLA2G2A	P14555	144 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF30	P17039	623 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	BGN	P21810	368 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	IVD	P26440	423 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	HMGCL	P35914	325 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	YAP1	P46937	504 aa	Known RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	MEOX2	P50222	304 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	RAB13	P51153	203 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	ART1	P52961	327 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	RGS8	P57771	180 aa	Predicted RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	NANOS2	P60321	138 aa	Known RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	CNTNAP1	P78357	1384 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	OGDH	Q02218	1023 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF85	Q03923	595 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	LIPE	Q05469	1076 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	MERTK	Q12866	999 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	ILF3	Q12906	894 aa	Known RBP eCLIP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	PPIL2	Q13356	520 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	FLOT2	Q14254	428 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	DMC1	Q14565	340 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	FASTKD3	Q14CZ7	662 aa	Known RBP	4.08	□□□□□ -1.76
SS18-223	ENST00000583595	PDK2	Q15119	407 aa		4.08	□□□□□ -1.76
SS18-223	ENST00000583595	SIX1	Q15475	284 aa	Predicted RBP	4.08	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms