RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MCHR2Q969V1 340 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 CDRT15Q96T59 188 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 MRPL13Q9BYD1 178 aaKnown RBP20.73■□□□□ 0.91
SHMT1-206ENST00000579558 ANKRD19PQ9H560 264 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 NMNAT1Q9HAN9 279 aaPredicted RBP20.73■□□□□ 0.91
SHMT1-206ENST00000579558 TMEM38BQ9NVV0 291 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 NDE1Q9NXR1 346 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 ZNF224Q9NZL3 707 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 MAGEL2Q9UJ55 1249 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 FAM32AQ9Y421 112 aaKnown RBP20.73■□□□□ 0.91
SHMT1-206ENST00000579558 PMF1-BGLAPU3KQ54 211 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 NPIPB13A6NJU9 1138 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 EFCAB9A8MZ26 197 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 NPIPB4C9JG80 1138 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 H7C417 338 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 SSX4O60224 188 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 RAB36O95755 333 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 PTDSS1P48651 473 aaKnown RBP20.72■□□□□ 0.91
SHMT1-206ENST00000579558 NUDT6P53370 316 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 HGFACQ04756 655 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 TOP3AQ13472 1001 aaPredicted RBP20.72■□□□□ 0.91
SHMT1-206ENST00000579558 HIST3H3Q16695 136 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 ARMC4Q5T2S8 1044 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 TBPL2Q6SJ96 375 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 C16orf89Q6UX73 402 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 MBOAT2Q6ZWT7 520 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 RRM2BQ7LG56 351 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 OAFQ86UD1 273 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 SKA3Q8IX90 412 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 FAM86B1Q8N7N1 296 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 NUP37Q8NFH4 326 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 OR51A7Q8NH64 312 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 MS4A3Q96HJ5 214 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 SEPHS2Q99611 448 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 TXNIPQ9H3M7 391 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 DENND2DQ9H6A0 471 aaPredicted RBP20.72■□□□□ 0.91
SHMT1-206ENST00000579558 GORASP2Q9H8Y8 452 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 NDUFAF4Q9P032 175 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 V9GYQ6 96 aa20.72■□□□□ 0.91
SHMT1-206ENST00000579558 TRAV27A0A087WT01 109 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 FARS2O95363 451 aaKnown RBP20.71■□□□□ 0.91
SHMT1-206ENST00000579558 H1F0P07305 194 aaKnown RBP20.71■□□□□ 0.91
SHMT1-206ENST00000579558 OR8G3PP0DMU2 310 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 SERPINF1P36955 418 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 GIPRP48546 466 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 ZNF84P51523 738 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 RAB1AP62820 205 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 TAF11Q15544 211 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 FXNQ16595 210 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 SWI5Q1ZZU3 235 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 MST1LQ2TV78 715 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 Q71RC1 249 aaPredicted RBP20.71■□□□□ 0.91
SHMT1-206ENST00000579558 IGFN1Q86VF2 1251 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 DEFB107AQ8IZN7 70 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 OR13C2Q8NGS9 318 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 HTRA1Q92743 480 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 ZNF75AQ96N20 296 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 CD300AQ9UGN4 299 aa20.71■□□□□ 0.91
SHMT1-206ENST00000579558 hCG_2039718K7EN88 272 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 PDE5AO76074 875 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 OR4A8P0C604 315 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 PATE4P0C8F1 98 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 ZNF14P17017 642 aaPredicted RBP20.7■□□□□ 0.9
SHMT1-206ENST00000579558 RHCEP18577 417 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 MSX2P35548 267 aaPredicted RBP20.7■□□□□ 0.9
SHMT1-206ENST00000579558 GPR4P46093 362 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 SLC9A3P48764 834 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 CTXN1P60606 82 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 SNRPD2P62316 118 aaKnown RBP20.7■□□□□ 0.9
SHMT1-206ENST00000579558 ADIPOQQ15848 244 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 ANKDD1AQ495B1 522 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 GKAP1Q5VSY0 366 aaPredicted RBP20.7■□□□□ 0.9
SHMT1-206ENST00000579558 OR4K5Q8NGD3 323 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 HDAC2Q92769 488 aaKnown RBP20.7■□□□□ 0.9
SHMT1-206ENST00000579558 C7orf34Q96L11 122 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 SH3GL3Q99963 347 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 FBXL3Q9UKT7 428 aa20.7■□□□□ 0.9
SHMT1-206ENST00000579558 A0A1W2PRQ8 180 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 RNF223E7ERA6 249 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 LY6G6DO95868 133 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 FAM107AO95990 144 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 IGHMP01871 453 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 HEXAP06865 529 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 THBS4P35443 961 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 MNAT1P51948 309 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 RPL27P61353 136 aaKnown RBP20.69■□□□□ 0.9
SHMT1-206ENST00000579558 VLDLRP98155 873 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 CD47Q08722 323 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 SNTB2Q13425 540 aaKnown RBP20.69■□□□□ 0.9
SHMT1-206ENST00000579558 DGCR6Q14129 220 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 KRT72Q14CN4 511 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 FGD3Q5JSP0 725 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 PODNL1Q6PEZ8 512 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 DNM1P46Q6ZS02 220 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 FITM2Q8N6M3 262 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 LRRC75AQ8NAA5 344 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 FGFBP3Q8TAT2 258 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 SLC7A13Q8TCU3 470 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 NSMCE2Q96MF7 247 aa20.69■□□□□ 0.9
SHMT1-206ENST00000579558 TNFRSF13CQ96RJ3 184 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms