RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 GDF2Q9UK05 429 aaPredicted RBP12.88□□□□□ -0.35
SS18-212ENST00000579061 FBXO9Q9UK97 447 aaPredicted RBP12.88□□□□□ -0.35
SS18-212ENST00000579061 ZANQ9Y493 2812 aa12.88□□□□□ -0.35
SS18-212ENST00000579061 CSPG4Q6UVK1 2322 aa12.88□□□□□ -0.35
SS18-212ENST00000579061 TLN2Q9Y4G6 2542 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 A0A087WUU8 490 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 B9A039 149 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 NDUFS7O75251 213 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 TRMUO75648 421 aaKnown RBP12.87□□□□□ -0.35
SS18-212ENST00000579061 FARS2O95363 451 aaKnown RBP12.87□□□□□ -0.35
SS18-212ENST00000579061 HLA-HP01893 362 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 HEXAP06865 529 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 SAGP10523 405 aaPredicted RBP12.87□□□□□ -0.35
SS18-212ENST00000579061 ZNF14P17017 642 aaPredicted RBP12.87□□□□□ -0.35
SS18-212ENST00000579061 RHCEP18577 417 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 FUT4P22083 530 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 ACVR1BP36896 505 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 SERPINF1P36955 418 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 MNAT1P51948 309 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 DSCR9P59020 149 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 RAB1AP62820 205 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 HGFACQ04756 655 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 NPRL3Q12980 569 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 TNK1Q13470 666 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 LAPTM4AQ15012 233 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 RAB35Q15286 201 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 MST1LQ2TV78 715 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 ALG10Q5BKT4 473 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 C10orf128Q5T292 105 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 C16orf89Q6UX73 402 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 CLEC9AQ6UXN8 241 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 ZNF730Q6ZMV8 503 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 TMPRSS11FQ6ZWK6 438 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 RRM2BQ7LG56 351 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 TSEN54Q7Z6J9 526 aaKnown RBP12.87□□□□□ -0.35
SS18-212ENST00000579061 MYPOPQ86VE0 399 aaPredicted RBP12.87□□□□□ -0.35
SS18-212ENST00000579061 SKA3Q8IX90 412 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 CDK20Q8IZL9 346 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 SLC22A24Q8N4F4 322 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 RNF148Q8N7C7 305 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 FAM156AQ8NDB6 213 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 FNDC8Q8TC99 324 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 CCT8L2Q96SF2 557 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 ALG12Q9BV10 488 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 NMNAT1Q9HAN9 279 aaPredicted RBP12.87□□□□□ -0.35
SS18-212ENST00000579061 SMURF2Q9HAU4 748 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 CD300AQ9UGN4 299 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 MAGEL2Q9UJ55 1249 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 FAM32AQ9Y421 112 aaKnown RBP12.87□□□□□ -0.35
SS18-212ENST00000579061 NF1P21359 2839 aa12.87□□□□□ -0.35
SS18-212ENST00000579061 A0A1W2PRQ8 180 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 EFCAB9A8MZ26 197 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 RAB36O95755 333 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 H1F0P07305 194 aaKnown RBP12.86□□□□□ -0.35
SS18-212ENST00000579061 MAKP20794 623 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 ZNF84P51523 738 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 RPL27P61353 136 aaKnown RBP12.86□□□□□ -0.35
SS18-212ENST00000579061 LSM11P83369 360 aaKnown RBP eCLIP12.86□□□□□ -0.35
SS18-212ENST00000579061 RUNX1T1Q06455 604 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 DGCR6Q14129 220 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 KRT72Q14CN4 511 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 EFNB3Q15768 340 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 ADIPOQQ15848 244 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 FAM205BPQ63HN1 556 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 OAFQ86UD1 273 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 LRRC75AQ8NAA5 344 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 RBM15BQ8NDT2 890 aaKnown RBP12.86□□□□□ -0.35
SS18-212ENST00000579061 FBXO17Q96EF6 278 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 C7orf34Q96L11 122 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 ZNF347Q96SE7 839 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 CDRT15Q96T59 188 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 SMR3AQ99954 134 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 NOX3Q9HBY0 568 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 NDUFAF4Q9P032 175 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 TMEM5Q9Y2B1 443 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 SPEF1Q9Y4P9 236 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 NSD1Q96L73 2696 aaPredicted RBP12.86□□□□□ -0.35
SS18-212ENST00000579061 CR1P17927 2039 aa12.86□□□□□ -0.35
SS18-212ENST00000579061 RTTNQ86VV8 2226 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 CHD3Q12873 2000 aaKnown RBP12.85□□□□□ -0.35
SS18-212ENST00000579061 SMAD7O15105 426 aaKnown RBP12.85□□□□□ -0.35
SS18-212ENST00000579061 SSX4O60224 188 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 LY6G6DO95868 133 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 OR4A8P0C604 315 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 ZNF35P13682 527 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 ITGA2P17301 1181 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 GIPRP48546 466 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 PTDSS1P48651 473 aaKnown RBP12.85□□□□□ -0.35
SS18-212ENST00000579061 NUDT6P53370 316 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 CTXN1P60606 82 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 SNRPD2P62316 118 aaKnown RBP12.85□□□□□ -0.35
SS18-212ENST00000579061 PIGFQ07326 219 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 FHL1Q13642 323 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 SLC7A13Q8TCU3 470 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 HDAC2Q92769 488 aaKnown RBP12.85□□□□□ -0.35
SS18-212ENST00000579061 NMD3Q96D46 503 aaKnown RBP12.85□□□□□ -0.35
SS18-212ENST00000579061 PYURFQ96I23 114 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 TNFRSF13CQ96RJ3 184 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 KCNK17Q96T54 332 aa12.85□□□□□ -0.35
SS18-212ENST00000579061 REG4Q9BYZ8 158 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms