RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 INIPQ9NRY2 104 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 TAS2R5Q9NYW4 299 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 GLTPQ9NZD2 209 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 ABCD2Q9UBJ2 740 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 TAGLN3Q9UI15 199 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 FBXL3Q9UKT7 428 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 MOKQ9UQ07 419 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 FAM32AQ9Y421 112 aaKnown RBP7.06□□□□□ -1.28
VPS53-214ENST00000572607 PMF1-BGLAPU3KQ54 211 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 CSPG4Q6UVK1 2322 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 TRIM64A6NGJ6 449 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 TRIM64BA6NI03 449 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 CENPBD1B2RD01 187 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 OVOL3O00110 214 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 SMAD7O15105 426 aaKnown RBP7.05□□□□□ -1.28
VPS53-214ENST00000572607 UBL3O95164 117 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 CECR9P0C854 216 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 B4GALT1P15291 398 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 NCK1P16333 377 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 AQP2P41181 271 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 YAP1P46937 504 aaKnown RBP7.05□□□□□ -1.28
VPS53-214ENST00000572607 ZNF84P51523 738 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 IDH3GP51553 393 aaPredicted RBP7.05□□□□□ -1.28
VPS53-214ENST00000572607 MNAT1P51948 309 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 NUDT6P53370 316 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 NAAAQ02083 359 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 RPL18Q07020 188 aaKnown RBP7.05□□□□□ -1.28
VPS53-214ENST00000572607 KRT72Q14CN4 511 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 RAB35Q15286 201 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 ALG10Q5BKT4 473 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 SAMD4BQ5PRF9 694 aaKnown RBP7.05□□□□□ -1.28
VPS53-214ENST00000572607 PHYHD1Q5SRE7 291 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 GLYATQ6IB77 296 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 C8orf82Q6P1X6 216 aaPredicted RBP7.05□□□□□ -1.28
VPS53-214ENST00000572607 CLEC9AQ6UXN8 241 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 B3GLCTQ6Y288 498 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 ZNF730Q6ZMV8 503 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 VTCN1Q7Z7D3 282 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 MDP1Q86V88 176 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 RNF113BQ8IZP6 322 aaKnown RBP7.05□□□□□ -1.28
VPS53-214ENST00000572607 IL17RDQ8NFM7 739 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 ACOT11Q8WXI4 607 aaPredicted RBP7.05□□□□□ -1.28
VPS53-214ENST00000572607 TMEM54Q969K7 222 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 BPIFA2Q96DR5 249 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 CACNG6Q9BXT2 260 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 NELFAQ9H3P2 528 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 DENND2DQ9H6A0 471 aaPredicted RBP7.05□□□□□ -1.28
VPS53-214ENST00000572607 RHCGQ9UBD6 479 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 CRNNQ9UBG3 495 aaPredicted RBP7.05□□□□□ -1.28
VPS53-214ENST00000572607 EGFL7Q9UHF1 273 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 MAGEL2Q9UJ55 1249 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 FBXO9Q9UK97 447 aaPredicted RBP7.05□□□□□ -1.28
VPS53-214ENST00000572607 A4GNTQ9UNA3 340 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 SPEF1Q9Y4P9 236 aa7.05□□□□□ -1.28
VPS53-214ENST00000572607 FREM1Q5H8C1 2179 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 NPIPB13A6NJU9 1138 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 KIAA1324LA8MWY0 1029 aaPredicted RBP7.04□□□□□ -1.28
VPS53-214ENST00000572607 EFCAB9A8MZ26 197 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 NPIPB4C9JG80 1138 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 DHHO43323 396 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 SSX4O60224 188 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 PIP5K1CO60331 668 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 IGKV3-15P01624 115 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 IGLV1-44P01699 117 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 CD8AP01732 235 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 HLA-HP01893 362 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 F13BP05160 661 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 ERCC1P07992 297 aaPredicted RBP7.04□□□□□ -1.28
VPS53-214ENST00000572607 QDPRP09417 244 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 OR8G3PP0DMU2 310 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 PTDSS1P48651 473 aaKnown RBP7.04□□□□□ -1.28
VPS53-214ENST00000572607 SLC9A3P48764 834 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 GALK2Q01415 458 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 PIGFQ07326 219 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 ANKDD1AQ495B1 522 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 SLC36A2Q495M3 483 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 GKAP1Q5VSY0 366 aaPredicted RBP7.04□□□□□ -1.28
VPS53-214ENST00000572607 TMEM53Q6P2H8 277 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 VHLLQ6RSH7 139 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 CLEC2AQ6UVW9 174 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 Q71RC1 249 aaPredicted RBP7.04□□□□□ -1.28
VPS53-214ENST00000572607 PIWIL3Q7Z3Z3 882 aaKnown RBP7.04□□□□□ -1.28
VPS53-214ENST00000572607 PIGWQ7Z7B1 504 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 DPPA2Q7Z7J5 298 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 NRMQ8IXM6 262 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 PGAM4Q8N0Y7 254 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 RNF148Q8N7C7 305 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 NOXO1Q8NFA2 376 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 LIPHQ8WWY8 451 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 MCUR1Q96AQ8 359 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 FBXO17Q96EF6 278 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 COX4I2Q96KJ9 171 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 RHNO1Q9BSD3 238 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 KCNN2Q9H2S1 579 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 ANKRD19PQ9H560 264 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 CA10Q9NS85 328 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 C20orf141Q9NUB4 165 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 TMEM5Q9Y2B1 443 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 HIF3AQ9Y2N7 669 aa7.04□□□□□ -1.28
VPS53-214ENST00000572607 FKBP7Q9Y680 259 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms