RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SDR16C5Q8N3Y7 309 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 C15orf40Q8WUR7 153 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 C4orf45Q96LM5 186 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 DCBLD2Q96PD2 775 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 PCNX3Q9H6A9 2034 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 TRAV36DV7A0A075B6V5 113 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 LINC00862A6NCI5 91 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 TSPAN2O60636 221 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 CD38P28907 300 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 LCN1P31025 176 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 ODF4Q2M2E3 257 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 DEFB133Q30KQ1 61 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 C9orf40Q8IXQ3 194 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 SIX5Q8N196 739 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 RADILQ96JH8 1075 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 SEC22CQ9BRL7 303 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 RAB33BQ9H082 229 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 STEAP1Q9UHE8 339 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 HSPB2A8KAH6 182 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 H3BSH0 61 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 PHYHO14832 338 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 ICMTO60725 284 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 MPC2O95563 127 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 SSTR2P30874 369 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 BLVRAP53004 296 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 SCAND1P57086 179 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 ZP2Q05996 745 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 RASGEF1BQ0VAM2 473 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 ELAVL1Q15717 326 aaKnown RBP20.59■□□□□ 0.89
VPS53-211ENST00000571805 HSPB2Q16082 182 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 FDX2Q6P4F2 183 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 OR8K3Q8NH51 312 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 MED30Q96HR3 178 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 PTDSS2Q9BVG9 487 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 SLC2A4RGQ9NR83 387 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 DHCR7Q9UBM7 475 aaKnown RBP20.59■□□□□ 0.89
VPS53-211ENST00000571805 EIF3KQ9UBQ5 218 aaKnown RBP20.59■□□□□ 0.89
VPS53-211ENST00000571805 PCDHGA5Q9Y5G8 931 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 SEC16AO15027 2179 aa20.59■□□□□ 0.89
VPS53-211ENST00000571805 COL5A1P20908 1838 aaPredicted RBP20.58■□□□□ 0.89
VPS53-211ENST00000571805 C11orf98E9PRG8 122 aa20.58■□□□□ 0.89
VPS53-211ENST00000571805 ZNF81P51508 661 aa20.58■□□□□ 0.89
VPS53-211ENST00000571805 DCAF7P61962 342 aa20.58■□□□□ 0.89
VPS53-211ENST00000571805 WDR38Q5JTN6 314 aa20.58■□□□□ 0.89
VPS53-211ENST00000571805 PRAMEF17Q5VTA0 474 aa20.58■□□□□ 0.89
VPS53-211ENST00000571805 SLC25A25Q6KCM7 469 aa20.58■□□□□ 0.89
VPS53-211ENST00000571805 GLB1L2Q8IW92 636 aa20.58■□□□□ 0.89
VPS53-211ENST00000571805 ATOH1Q92858 354 aaPredicted RBP20.58■□□□□ 0.89
VPS53-211ENST00000571805 ZDHHC12Q96GR4 267 aa20.58■□□□□ 0.89
VPS53-211ENST00000571805 DPCDQ9BVM2 203 aaPredicted RBP20.58■□□□□ 0.89
VPS53-211ENST00000571805 B9D1Q9UPM9 204 aa20.58■□□□□ 0.89
VPS53-211ENST00000571805 A0A1W2PQD3 144 aa20.58■□□□□ 0.88
VPS53-211ENST00000571805 TCRBV16S1A1N1A0A5B0 115 aa20.58■□□□□ 0.88
VPS53-211ENST00000571805 ALG1L2C9J202 215 aa20.58■□□□□ 0.88
VPS53-211ENST00000571805 XRCC3O43542 346 aa20.58■□□□□ 0.88
VPS53-211ENST00000571805 NDUFB5O43674 189 aa20.58■□□□□ 0.88
VPS53-211ENST00000571805 CDC40O60508 579 aaKnown RBP eCLIP20.58■□□□□ 0.88
VPS53-211ENST00000571805 EIF4E2O60573 245 aaKnown RBP20.58■□□□□ 0.88
VPS53-211ENST00000571805 CD27P26842 260 aa20.58■□□□□ 0.88
VPS53-211ENST00000571805 IL12BP29460 328 aa20.58■□□□□ 0.88
VPS53-211ENST00000571805 MECP2P51608 486 aaKnown RBP20.58■□□□□ 0.88
VPS53-211ENST00000571805 NR0B1P51843 470 aaKnown RBP20.58■□□□□ 0.88
VPS53-211ENST00000571805 OTPQ5XKR4 325 aa20.58■□□□□ 0.88
VPS53-211ENST00000571805 CHRDL2Q6WN34 429 aa20.58■□□□□ 0.88
VPS53-211ENST00000571805 ZNF227Q86WZ6 799 aa20.58■□□□□ 0.88
VPS53-211ENST00000571805 OR8H3Q8N146 312 aa20.58■□□□□ 0.88
VPS53-211ENST00000571805 AUP1Q9Y679 476 aa20.58■□□□□ 0.88
VPS53-211ENST00000571805 RP1P56715 2156 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 NDUFB6O95139 128 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 OGFOD3Q6PK18 319 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 SPICQ8N5J4 248 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 TSTD1Q8NFU3 115 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 OR8B4Q96RC9 309 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 A0A1W2PQ72 361 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 TO15178 435 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 TOXO94900 526 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 ALDOBP05062 364 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 CFPP27918 469 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 EPHA4P54764 986 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 MAMSTRQ6ZN01 415 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 MAMDC2Q7Z304 686 aaPredicted RBP20.57■□□□□ 0.88
VPS53-211ENST00000571805 ZNF519Q8TB69 540 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 SLC25A36Q96CQ1 311 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 MVB12AQ96EY5 273 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 ELOVL3Q9HB03 270 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 PIPOXQ9P0Z9 390 aa20.57■□□□□ 0.88
VPS53-211ENST00000571805 CACNA1CQ13936 2221 aa20.56■□□□□ 0.88
VPS53-211ENST00000571805 XKRYO14609 159 aa20.56■□□□□ 0.88
VPS53-211ENST00000571805 CPN1P15169 458 aa20.56■□□□□ 0.88
VPS53-211ENST00000571805 IFNGR1P15260 489 aa20.56■□□□□ 0.88
VPS53-211ENST00000571805 ANXA7P20073 488 aaKnown RBP20.56■□□□□ 0.88
VPS53-211ENST00000571805 SLC17A1Q14916 467 aa20.56■□□□□ 0.88
VPS53-211ENST00000571805 ACKR1Q16570 336 aa20.56■□□□□ 0.88
VPS53-211ENST00000571805 SGCBQ16585 318 aa20.56■□□□□ 0.88
VPS53-211ENST00000571805 MEP1BQ16820 701 aa20.56■□□□□ 0.88
VPS53-211ENST00000571805 METTL21AQ8WXB1 218 aa20.56■□□□□ 0.88
VPS53-211ENST00000571805 FOXN4Q96NZ1 517 aa20.56■□□□□ 0.88
VPS53-211ENST00000571805 PRSS37A4D1T9 235 aa20.56■□□□□ 0.88
VPS53-211ENST00000571805 NPIPB7O75200 414 aa20.56■□□□□ 0.88
VPS53-211ENST00000571805 ZNF217O75362 1048 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms