RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 BEST3Q8N1M1 668 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 CPXM2Q8N436 756 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 AQP11Q8NBQ7 271 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 SDR9C7Q8NEX9 313 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 OR51Q1Q8NH59 317 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 SECTM1Q8WVN6 248 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 ALKBH7Q9BT30 221 aaPredicted RBP9.91□□□□□ -0.82
CLK3-226ENST00000569406 ZNF426Q9BUY5 554 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 PCBD2Q9H0N5 130 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 LINC00597Q9H2U6 94 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 TAS2R5Q9NYW4 299 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 IGLV3-16A0A075B6K0 115 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 ANKRD20A5PA0PJZ0 165 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 LOC730098B7Z3J9 87 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 C9J4A7 227 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 ZNF7P17097 686 aaPredicted RBP9.91□□□□□ -0.82
CLK3-226ENST00000569406 DLSTP36957 453 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 OR10A3P58181 314 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 AIMP2Q13155 320 aaKnown RBP9.91□□□□□ -0.82
CLK3-226ENST00000569406 RPS26P11Q5JNZ5 115 aaPredicted RBP9.91□□□□□ -0.82
CLK3-226ENST00000569406 LRRC73Q5JTD7 316 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 ELFN2Q5R3F8 820 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 FAM199XQ6PEV8 388 aaPredicted RBP9.91□□□□□ -0.82
CLK3-226ENST00000569406 KIRREL2Q6UWL6 708 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 HORMAD2Q8N7B1 307 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 CD300LFQ8TDQ1 290 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 RNF141Q8WVD5 230 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 CDS1Q92903 461 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 FAM210BQ96KR6 192 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 UBL7Q96S82 380 aaPredicted RBP9.91□□□□□ -0.82
CLK3-226ENST00000569406 NUDT4Q9NZJ9 180 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 OARD1Q9Y530 152 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 URGCP-MRPS24S4R325 110 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 TRDV1A0A1B0GX56 115 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 TLX2O43763 284 aaPredicted RBP9.9□□□□□ -0.82
CLK3-226ENST00000569406 RAB36O95755 333 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 IFNGR2P38484 337 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 ABHD18Q0P651 414 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 LINC00303Q3SY05 128 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 ZNF573Q86YE8 665 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 HJURPQ8NCD3 748 aaPredicted RBP9.9□□□□□ -0.82
CLK3-226ENST00000569406 OR2AK2Q8NG84 335 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 MICU1Q9BPX6 476 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 ARHGAP9Q9BRR9 750 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 TVP23BQ9NYZ1 205 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 CACFD1Q9UGQ2 172 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 SF3B6Q9Y3B4 125 aaKnown RBP9.9□□□□□ -0.82
CLK3-226ENST00000569406 FBXO7Q9Y3I1 522 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 SPEGQ15772 3267 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 TRBV5-3A0A0A0MS03 114 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 TRBV11-1A0A0K0K1C0 115 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 AHRRA9YTQ3 701 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 HIST1H2BKO60814 126 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 OR2C1O95371 312 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 IL18BPO95998 194 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 HIST1H2BJP06899 126 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 ST6GAL1P15907 406 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 HIST1H2BOP23527 126 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 AGTR1P30556 359 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 FGF9P31371 208 aaPredicted RBP9.9□□□□□ -0.82
CLK3-226ENST00000569406 HIST1H2BBP33778 126 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 VEGFBP49765 207 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 HIST1H2BDP58876 126 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 HIST1H2BCP62807 126 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 VAMP2P63027 116 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 HTRA3P83110 453 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 PITPNAQ00169 270 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 SLC14A1Q13336 389 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 KLF9Q13886 244 aaPredicted RBP9.9□□□□□ -0.82
CLK3-226ENST00000569406 HIST2H2BEQ16778 126 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.9□□□□□ -0.82
CLK3-226ENST00000569406 TMEM215Q68D42 235 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 TANGO2Q6ICL3 276 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 ZNF813Q6ZN06 617 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 UBE3DQ7Z6J8 389 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 NR2C2APQ86WQ0 139 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 HIST1H2BHQ93079 126 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 TM4SF18Q96CE8 201 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 PHYHIPLQ96FC7 376 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 HIST1H2BNQ99877 126 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 HIST1H2BMQ99879 126 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 NUDT16L1Q9BRJ7 211 aaKnown RBP9.9□□□□□ -0.82
CLK3-226ENST00000569406 SLC46A2Q9BY10 475 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 PRUNE2Q8WUY3 3088 aa9.9□□□□□ -0.82
CLK3-226ENST00000569406 TRIOO75962 3097 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 KCNE1BA0A087WTH5 132 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 MGAT4DA6NG13 374 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 SCDO00767 359 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 OGG1O15527 345 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 ZNF432O94892 652 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 TUBG1P23258 451 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 JOSD1Q15040 202 aaPredicted RBP9.9□□□□□ -0.83
CLK3-226ENST00000569406 PRRT3Q5FWE3 981 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 KIAA1161Q6NSJ0 714 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 FAM180AQ6UWF9 173 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 CEACAM20Q6UY09 585 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 WDR53Q7Z5U6 358 aaPredicted RBP9.9□□□□□ -0.83
CLK3-226ENST00000569406 OR52I1Q8NGK6 324 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 UBTD2Q8WUN7 234 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 CHTF18Q8WVB6 975 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms