RNA–Protein interactions for RNA: ENST00000568676.5

HERPUD1-215, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, human

TSL 2

Gene HERPUD1, Length 571 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERPUD1-215	ENST00000568676	SLC36A2	Q495M3	483 aa		13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	REEP3	Q6NUK4	255 aa		13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	RBMS3	Q6XE24	437 aa	Known RBP	13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	CROCCP2	Q86T23	111 aa		13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	RANBP3L	Q86VV4	465 aa	Predicted RBP	13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	MIER2	Q8N344	545 aa		13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	C10orf53	Q8N6V4	93 aa		13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	CPEB3	Q8NE35	698 aa	Known RBP	13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	RNF217	Q8TC41	542 aa		13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	MOGAT1	Q96PD6	335 aa		13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	ZNF607	Q96SK3	696 aa		13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	SLC6A7	Q99884	636 aa		13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	PAIP1	Q9H074	479 aa	Known RBP	13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	KCNK9	Q9NPC2	374 aa		13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	WIPI2	Q9Y4P8	454 aa		13.43	□□□□□ -0.26
HERPUD1-215	ENST00000568676	PPIAL4E	A0A075B759	164 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	PPIAL4C	A0A0B4J2A2	164 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	PPIAL4D	F5H284	164 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	UBD	O15205	165 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	KCNAB3	O43448	404 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	CDC14B	O60729	498 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	SNN	O75324	88 aa	Predicted RBP	13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	SERPINB7	O75635	380 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	LCK	P06239	509 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	VIM	P08670	466 aa	Known RBP	13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	ADORA3	P0DMS8	318 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	PPIAL4F	P0DN26	164 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	HKR1	P10072	659 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	ADRA2C	P18825	462 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	DRD4	P21917	467 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	UCP2	P55851	309 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	BID	P55957	195 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	UBA52	P62987	128 aa	Known RBP	13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	PLP2	Q04941	152 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	SLC3A1	Q07837	685 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	ZP4	Q12836	540 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	AVPI1	Q5T686	147 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	HHAT	Q5VTY9	493 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	WDR93	Q6P2C0	686 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	UNQ6126/PRO20091	Q6UXV3	157 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	C1orf174	Q8IYL3	243 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	ZDHHC22	Q8N966	263 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	ZNF566	Q969W8	418 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	ELMOD3	Q96FG2	381 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	SLC25A44	Q96H78	314 aa	Predicted RBP	13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	PAIP2	Q9BPZ3	127 aa	Known RBP	13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	C7orf69	Q9H7B7	122 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	SAP30L	Q9HAJ7	183 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	TMEM38B	Q9NVV0	291 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	GMEB1	Q9Y692	573 aa		13.42	□□□□□ -0.26
HERPUD1-215	ENST00000568676	IQCM	A0A1B0GVH7	501 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	TMPRSS2	O15393	492 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	TPD52L2	O43399	206 aa	Known RBP	13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	FMO6P	O60774	539 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	PRSS23	O95084	383 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	MFN2	O95140	757 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	CLPTM1	O96005	669 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	FSHB	P01225	129 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	IGHV3-13	P01766	116 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	FAM157B	P0CG42	384 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	CDK6	Q00534	326 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	MPP2	Q14168	576 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	ALKBH6	Q3KRA9	238 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	TNFAIP8L3	Q5GJ75	292 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	GCNT6	Q5T4J0	391 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	ZNF613	Q6PF04	617 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	USP51	Q70EK9	711 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	SLC35D2	Q76EJ3	337 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	NFKBID	Q8NI38	313 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	GPA33	Q99795	319 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	TMEM38A	Q9H6F2	299 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	RNF121	Q9H920	327 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	CGGBP1	Q9UFW8	167 aa	Predicted RBP	13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	CORO2B	Q9UQ03	480 aa		13.41	□□□□□ -0.26
HERPUD1-215	ENST00000568676	CENPBD1	B2RD01	187 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	DHH	O43323	396 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	SERPINI2	O75830	405 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	PATE4	P0C8F1	98 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	KIT	P10721	976 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	HOXB9	P17482	250 aa	Predicted RBP	13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	SLC6A2	P23975	617 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	LIPA	P38571	399 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	CDH12	P55289	794 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	LRIF1	Q5T3J3	769 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	WDR88	Q6ZMY6	472 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	SLC16A14	Q7RTX9	510 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	FGFBP3	Q8TAT2	258 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	GAL3ST1	Q99999	423 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	ESM1	Q9NQ30	184 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	CYSLTR2	Q9NS75	346 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	PCDHGB1	Q9Y5G3	927 aa		13.4	□□□□□ -0.26
HERPUD1-215	ENST00000568676	C11orf98	E9PRG8	122 aa		13.39	□□□□□ -0.27
HERPUD1-215	ENST00000568676	CHP2	O43745	196 aa		13.39	□□□□□ -0.27
HERPUD1-215	ENST00000568676	TPST1	O60507	370 aa		13.39	□□□□□ -0.27
HERPUD1-215	ENST00000568676	FOXH1	O75593	365 aa		13.39	□□□□□ -0.27
HERPUD1-215	ENST00000568676	MRPL19	P49406	292 aa	Known RBP	13.39	□□□□□ -0.27
HERPUD1-215	ENST00000568676	ZNF81	P51508	661 aa		13.39	□□□□□ -0.27
HERPUD1-215	ENST00000568676	ZNF84	P51523	738 aa		13.39	□□□□□ -0.27
HERPUD1-215	ENST00000568676	TUSC1	Q2TAM9	212 aa		13.39	□□□□□ -0.27
HERPUD1-215	ENST00000568676	LRFN4	Q6PJG9	635 aa		13.39	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms