RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 OR10H4Q8NGA5 316 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 OR11H7Q8NGC8 314 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 OR10A6Q8NH74 314 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 COQ8AQ8NI60 647 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SUN3Q8TAQ9 357 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ORAOV1Q8WV07 137 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 C11orf40Q8WZ69 217 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TAAR8Q969N4 342 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 RCN3Q96D15 328 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 BPIFA2Q96DR5 249 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ARSGQ96EG1 525 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SCRN2Q96FV2 425 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SLC41A3Q96GZ6 507 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ADGRG7Q96K78 797 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SENP8Q96LD8 212 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TEX37Q96LM6 180 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 PRRC1Q96M27 445 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 PRAP1Q96NZ9 151 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 GPR78Q96P69 363 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 OR5B2Q96R09 309 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 FAAP24Q9BTP7 215 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 WRAP53Q9BUR4 548 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 TPPP3Q9BW30 176 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 RAB34Q9BZG1 259 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TKTL2Q9H0I9 626 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 PCDHAC1Q9H158 963 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 CDT1Q9H211 546 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SLCO5A1Q9H2Y9 848 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TUBA4BQ9H853 241 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SFXN1Q9H9B4 322 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 RHOFQ9HBH0 211 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 WFDC1Q9HC57 220 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SAYSD1Q9NPB0 183 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 NGBQ9NPG2 151 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 EXOSC3Q9NQT5 275 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 CHRAC1Q9NRG0 131 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 YAE1D1Q9NRH1 226 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SLC2A9Q9NRM0 540 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 MARCOQ9UEW3 520 aaPredicted RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 OR14J1Q9UGF5 321 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 CD84Q9UIB8 345 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ZNF223Q9UK11 482 aaPredicted RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 PITPNC1Q9UKF7 332 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ZNF346Q9UL40 294 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 FZD4Q9ULV1 537 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 RHBDD3Q9Y3P4 386 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 RBM7Q9Y580 266 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 MMP24Q9Y5R2 645 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 PTGDR2Q9Y5Y4 395 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 POMT1Q9Y6A1 747 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 PRSS21Q9Y6M0 314 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 COLEC10Q9Y6Z7 277 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SIPA1L3O60292 1781 aaPredicted RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 BCORQ6W2J9 1755 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 KIDINS220Q9ULH0 1771 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 NRAPQ86VF7 1730 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ZNF646O15015 1829 aaPredicted RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 LOC105371242A0A075B767 164 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 A0A096LPI6 279 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ZCWPW2A0A1B0GU75 182 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 A0A1B0GW15 77 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 HYKKA2RU49 373 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 OR5H15A6NDH6 313 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 OR5H1A6NKK0 313 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ANXA2P2A6NMY6 339 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CLCA1A8K7I4 914 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 INMT-MINDY4F8WBC2 141 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ZNF195O14628 629 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 DVL1O14640 695 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PLA2G10O15496 165 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 LYRM1O43325 122 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 EMC8O43402 210 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ADAM20O43506 726 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 DCXO43602 365 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PLRG1O43660 514 aaKnown RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 CDC40O60508 579 aaKnown RBP eCLIP2.93□□□□□ -1.94
VPS35-208ENST00000568612 TBX19O60806 448 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 B4GALT2O60909 372 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ATP6AP2O75787 350 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SIX6O95475 246 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SLC25A27O95847 323 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 FADS2O95864 444 aaKnown RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 SERPINA1P01009 418 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PMP2P02689 132 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 C1QCP02747 245 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 APODP05090 189 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SERPINE1P05121 402 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 BPGMP07738 259 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SFTPBP07988 381 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 F7P08709 466 aaPredicted RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 HNRNPA1P09651 372 aaKnown RBP eCLIP2.93□□□□□ -1.94
VPS35-208ENST00000568612 GKN3PP0CG01 181 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 IRF2P14316 349 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 RPA2P15927 270 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CSNK2A2P19784 350 aaPredicted RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 GSTM3P21266 225 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 TNFSF4P23510 183 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 KDELR1P24390 212 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 AZGP1P25311 298 aaKnown RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 HMGB2P26583 209 aaKnown RBP2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms