RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 MSH6P52701 1360 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 RPAP1Q9BWH6 1393 aaPredicted RBP1.27□□□□□ -2.21
VPS35-207ENST00000568191 OR5B21A6NL26 309 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 ZNF850A8MQ14 1090 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 H0YHG0 523 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 GAPDHP04406 335 aaKnown RBP1.27□□□□□ -2.21
VPS35-207ENST00000568191 PTMAP06454 111 aaKnown RBP1.27□□□□□ -2.21
VPS35-207ENST00000568191 IGHV1-8P0DP01 117 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 CCR1P32246 355 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 RPL13AP40429 203 aaKnown RBP1.27□□□□□ -2.21
VPS35-207ENST00000568191 ACAA2P42765 397 aaKnown RBP1.27□□□□□ -2.21
VPS35-207ENST00000568191 DUSP3P51452 185 aaPredicted RBP1.27□□□□□ -2.21
VPS35-207ENST00000568191 ESRRGP62508 458 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 ARG2P78540 354 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 TATDN3Q17R31 274 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 CCDC92Q53HC0 331 aaPredicted RBP1.27□□□□□ -2.21
VPS35-207ENST00000568191 TMEM225Q6GV28 225 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 SLC25A24Q6NUK1 477 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 CEMP1Q6PRD7 247 aaPredicted RBP1.27□□□□□ -2.21
VPS35-207ENST00000568191 PEX26Q7Z412 305 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 OSR2Q8N2R0 312 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 PANX2Q96RD6 677 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 ZNF382Q96SR6 550 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 ZNF717Q9BY31 904 aaPredicted RBP1.27□□□□□ -2.21
VPS35-207ENST00000568191 SAMSN1Q9NSI8 373 aaKnown RBP1.27□□□□□ -2.21
VPS35-207ENST00000568191 CGNQ9P2M7 1197 aaKnown RBP1.27□□□□□ -2.21
VPS35-207ENST00000568191 ZNF229Q9UJW7 825 aa1.27□□□□□ -2.21
VPS35-207ENST00000568191 CARHSP1Q9Y2V2 147 aaKnown RBP1.27□□□□□ -2.21
VPS35-207ENST00000568191 GPATCH8Q9UKJ3 1502 aaKnown RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 IGHV5-10-1A0A0J9YXX1 117 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 TMEM223A0PJW6 202 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 MBLAC1A4D2B0 266 aaPredicted RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 ZNF726A6NNF4 738 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 HIDE1A8MVS5 230 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 KMOO15229 486 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 RAD51BO15315 384 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 POLR2DO15514 142 aaKnown RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 TBX19O60806 448 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 PEX11AO75192 247 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 CDRT1O95170 752 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 C1GALT1C1LP0DN25 315 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 FOLR1P15328 257 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 OPRD1P41143 372 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 CDKN1BP46527 198 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 FLI1Q01543 452 aaPredicted RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 SCRN3Q0VDG4 424 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 ZNF816Q0VGE8 651 aaPredicted RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 GANABQ14697 944 aaKnown RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 PON3Q15166 354 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 TPD52L1Q16890 204 aaPredicted RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 SFT2D3Q587I9 215 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 SPIN3Q5JUX0 258 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 TRIM40Q6P9F5 258 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 DUX4L9Q6RFH8 374 aaPredicted RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 ENPP6Q6UWR7 440 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 NTM-AS1Q6ZSK4 140 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 ABHD13Q7L211 337 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 LGI3Q8N145 548 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 MAGEE2Q8TD90 523 aaPredicted RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 SDR42E1Q8WUS8 393 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 RTN4IP1Q8WWV3 396 aaPredicted RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 RSPH1Q8WYR4 309 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 TM4SF18Q96CE8 201 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 CXorf40BQ96DE9 158 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 SENP8Q96LD8 212 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 FMO2Q99518 471 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 RARRES2Q99969 163 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 ERP44Q9BS26 406 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 RMND5AQ9H871 391 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 MCCC2Q9HCC0 563 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 SDAD1Q9NVU7 687 aaKnown RBP eCLIP1.26□□□□□ -2.21
VPS35-207ENST00000568191 HPF1Q9NWY4 346 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 KIAA1257Q9ULG3 409 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 ISY1Q9ULR0 285 aaKnown RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 PACSIN2Q9UNF0 486 aaPredicted RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 PSG8Q9UQ74 426 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 N6AMT1Q9Y5N5 214 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 MRPS18BQ9Y676 258 aaKnown RBP1.26□□□□□ -2.21
VPS35-207ENST00000568191 S4R3C0 116 aa1.26□□□□□ -2.21
VPS35-207ENST00000568191 ATP10AO60312 1499 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 SPECC1L-ADORA2AF8WAN1 911 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 SGK1O00141 431 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 ZNF207O43670 478 aaKnown RBP1.25□□□□□ -2.21
VPS35-207ENST00000568191 CCNKO75909 580 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 OR7A10O76100 309 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 UTS2O95399 124 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 C1orf105O95561 183 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 HEXBP07686 556 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 GNAO1P09471 354 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 OR56A5P0C7T3 313 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 PSMA5P28066 241 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 TNFSF9P41273 254 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 KIR3DL2P43630 455 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 GPR6P46095 362 aaPredicted RBP1.25□□□□□ -2.21
VPS35-207ENST00000568191 RORCP51449 518 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 CRYBB1P53674 252 aaPredicted RBP1.25□□□□□ -2.21
VPS35-207ENST00000568191 SUB1P53999 127 aaKnown RBP eCLIP1.25□□□□□ -2.21
VPS35-207ENST00000568191 NCBP1Q09161 790 aaKnown RBP1.25□□□□□ -2.21
VPS35-207ENST00000568191 TCP10Q12799 353 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 POU2AF1Q16633 256 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms