RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 MCHR2Q969V1 340 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 PLPPR2Q96GM1 343 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 HS3ST6Q96QI5 342 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 GPX7Q96SL4 187 aaPredicted RBP12.56□□□□□ -0.4
USP3-205ENST00000557884 FEVQ99581 238 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 NIPSNAP1Q9BPW8 284 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 IFT27Q9BW83 186 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 CLEC4MQ9H2X3 399 aaPredicted RBP12.56□□□□□ -0.4
USP3-205ENST00000557884 NELFAQ9H3P2 528 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 NTN4Q9HB63 628 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 RASSF1Q9NS23 344 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 ARMC1Q9NVT9 282 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 NPAP1Q9NZP6 1156 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 STX18Q9P2W9 335 aaKnown RBP12.56□□□□□ -0.4
USP3-205ENST00000557884 MGAT4BQ9UQ53 548 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 IER3IP1Q9Y5U9 82 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 MAGED1Q9Y5V3 778 aaPredicted RBP12.56□□□□□ -0.4
USP3-205ENST00000557884 LRBAP50851 2863 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 IGKV1D-43A0A0B4J1Z2 117 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 A6NIZ1 184 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 ZNF99A8MXY4 864 aaPredicted RBP12.55□□□□□ -0.4
USP3-205ENST00000557884 SOCS2O14508 198 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 XKRYO14609 159 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 DHHO43323 396 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 SOX14O95416 240 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 B4GALT1P15291 398 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 PRKACGP22612 351 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 SLC6A6P31641 620 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 CAPZA2P47755 286 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 UBE2NP61088 152 aaKnown RBP12.55□□□□□ -0.4
USP3-205ENST00000557884 RAP1BP61224 184 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 RAP1AP62834 184 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 KRR1Q13601 381 aaKnown RBP12.55□□□□□ -0.4
USP3-205ENST00000557884 GK3PQ14409 553 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 ATP6AP1Q15904 470 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 ZSCAN26Q16670 478 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 MESTQ5EB52 335 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 BEX5Q5H9J7 111 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 FAM205BPQ63HN1 556 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 FAM122BQ7Z309 247 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 AMIGO2Q86SJ2 522 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 C17orf78Q8N4C9 275 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 MAGEE2Q8TD90 523 aaPredicted RBP12.55□□□□□ -0.4
USP3-205ENST00000557884 LRTOMTQ8WZ04 291 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 NSMAFQ92636 917 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 DUS3LQ96G46 650 aaKnown RBP12.55□□□□□ -0.4
USP3-205ENST00000557884 ERMAPQ96PL5 475 aaPredicted RBP12.55□□□□□ -0.4
USP3-205ENST00000557884 KCNK17Q96T54 332 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 ALG12Q9BV10 488 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 DGCR6LQ9BY27 220 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 PLA2G12AQ9BZM1 189 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 DENND2DQ9H6A0 471 aaPredicted RBP12.55□□□□□ -0.4
USP3-205ENST00000557884 NRIP3Q9NQ35 241 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 AMDHD2Q9Y303 409 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 CDH10Q9Y6N8 788 aa12.55□□□□□ -0.4
USP3-205ENST00000557884 FAM221AA4D161 298 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 CENPBD1B2RD01 187 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 M0R1B8 84 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 IMPA2O14732 288 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 FASP25445 335 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 LOXP28300 417 aaPredicted RBP12.54□□□□□ -0.4
USP3-205ENST00000557884 SDHAP31040 664 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 RPS6KA3P51812 740 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 HIST3H3Q16695 136 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 GPR139Q6DWJ6 353 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 RASSF6Q6ZTQ3 369 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 CDC20BQ86Y33 519 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 OR52L1Q8NGH7 329 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 OR8D4Q8NGM9 314 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 NMD3Q96D46 503 aaKnown RBP12.54□□□□□ -0.4
USP3-205ENST00000557884 RBP7Q96R05 134 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 FOXB1Q99853 325 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 NGBQ9NPG2 151 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 TBC1D23Q9NUY8 699 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 ALPK2Q86TB3 2170 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 POLQO75417 2590 aa12.54□□□□□ -0.4
USP3-205ENST00000557884 A0A1W2PPR1 153 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 PRSS37A4D1T9 235 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 ZNF503-AS2A6NEH8 195 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 ARRDC5A6NEK1 342 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 DPRXA6NFQ7 191 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 ANKRD65E5RJM6 399 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 WNT11O96014 354 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 CD79AP11912 226 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 FCGR1AP12314 374 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 GSTM3P21266 225 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 CDAP32320 146 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 ZNF84P51523 738 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 BSPH1Q075Z2 132 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 SLC35F1Q5T1Q4 408 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 SHQ1Q6PI26 577 aaKnown RBP12.53□□□□□ -0.4
USP3-205ENST00000557884 PTCHD4Q6ZW05 846 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 ATG16L2Q8NAA4 619 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 NRGNQ92686 78 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 TSSK6Q9BXA6 273 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 SEMA6AQ9H2E6 1030 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 TMEM38BQ9NVV0 291 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 CSMD2Q7Z408 3487 aa12.53□□□□□ -0.4
USP3-205ENST00000557884 ARPC4-TTLL3A0A0A6YYG9 625 aa12.52□□□□□ -0.41
USP3-205ENST00000557884 SLC22A23A1A5C7 686 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms