RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 AASSQ9UDR5 926 aa12.88□□□□□ -0.35
SHMT2-208ENST00000553868 PSORS1C1Q9UIG5 152 aa12.88□□□□□ -0.35
SHMT2-208ENST00000553868 NPIPA1Q9UND3 350 aa12.88□□□□□ -0.35
SHMT2-208ENST00000553868 GPR52Q9Y2T5 361 aa12.88□□□□□ -0.35
SHMT2-208ENST00000553868 ADAM18Q9Y3Q7 739 aa12.88□□□□□ -0.35
SHMT2-208ENST00000553868 EML6Q6ZMW3 1958 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 SLC22A31A6NKX4 558 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 MS4A18H0YCH9 400 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 TNFSF11O14788 317 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 RGS10O43665 173 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 XPNPEP2O43895 674 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 SLC2A10O95528 541 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 BCL10O95999 233 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 CLPTM1O96005 669 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 CELA3AP09093 270 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 PIPP12273 146 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-208ENST00000553868 HIST1H1CP16403 213 aaKnown RBP12.87□□□□□ -0.35
SHMT2-208ENST00000553868 ENPP1P22413 925 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 DNASE1P24855 282 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 AGFG1P52594 562 aaKnown RBP12.87□□□□□ -0.35
SHMT2-208ENST00000553868 NUDT6P53370 316 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 SLC35A2P78381 396 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 HSF1Q00613 529 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 C1DQ13901 141 aaKnown RBP12.87□□□□□ -0.35
SHMT2-208ENST00000553868 CRMP1Q14194 572 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 ACKR1Q16570 336 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 MS4A18Q3C1V0 323 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 PLBD1Q6P4A8 553 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 GGNQ86UU5 652 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 LSRQ86X29 649 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-208ENST00000553868 DOLPP1Q86YN1 238 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 UBQLNLQ8IYU4 475 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 STX19Q8N4C7 294 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 SVOPQ8N4V2 548 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 TMEM99Q8N816 258 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 SLC37A3Q8NCC5 494 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 OR4K13Q8NH42 304 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 CPNE4Q96A23 557 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-208ENST00000553868 Q96M85 177 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 TSPAN32Q96QS1 320 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 DMRTA2Q96SC8 542 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 COPS4Q9BT78 406 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 DUSP21Q9H596 190 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 SEC14L4Q9UDX3 406 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 KCNN3Q9UGI6 736 aa12.87□□□□□ -0.35
SHMT2-208ENST00000553868 WARS2Q9UGM6 360 aaKnown RBP12.87□□□□□ -0.35
SHMT2-208ENST00000553868 ZNF346Q9UL40 294 aaKnown RBP12.87□□□□□ -0.35
SHMT2-208ENST00000553868 PCNX3Q9H6A9 2034 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 ANK3Q12955 4377 aaKnown RBP12.86□□□□□ -0.35
SHMT2-208ENST00000553868 AHCYL1O43865 530 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 SERPINI2O75830 405 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 DBTP11182 482 aaKnown RBP12.86□□□□□ -0.35
SHMT2-208ENST00000553868 ZNF43P17038 809 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 HTR1FP30939 366 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 ACVR1BP36896 505 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 EIF1AXP47813 144 aaKnown RBP12.86□□□□□ -0.35
SHMT2-208ENST00000553868 LHX2P50458 406 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 SLC25A1P53007 311 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 CLDN20P56880 219 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 H3F3AP84243 136 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 POU3F1Q03052 451 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-208ENST00000553868 ZNF91Q05481 1191 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 BLMHQ13867 455 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 ZNF362Q5T0B9 420 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-208ENST00000553868 LCN1P1Q5VSP4 162 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 NIPAL3Q6P499 406 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 LEG1Q6P5S2 330 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 AHSA2Q719I0 299 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 SLC35D2Q76EJ3 337 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 MEPCEQ7L2J0 689 aaKnown RBP12.86□□□□□ -0.35
SHMT2-208ENST00000553868 CHMP1BQ7LBR1 199 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 SDR9C7Q8NEX9 313 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 OR10D3Q8NH80 312 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 RASD2Q96D21 266 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 ADGRG7Q96K78 797 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 GPR137Q96N19 417 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 SF3B5Q9BWJ5 86 aaKnown RBP12.86□□□□□ -0.35
SHMT2-208ENST00000553868 CCDC90BQ9GZT6 254 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 DEFB127Q9H1M4 99 aa12.86□□□□□ -0.35
SHMT2-208ENST00000553868 ARHGEF9O43307 516 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 AKAP8O43823 692 aaKnown RBP12.85□□□□□ -0.35
SHMT2-208ENST00000553868 CXCL13O43927 109 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 CTAG2O75638 210 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 TOXO94900 526 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 SYNGR4O95473 234 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 PLGP00747 810 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-208ENST00000553868 IGHG3P01860 377 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 SMIM18P0DKX4 95 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 NR2C1P13056 603 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 ATP6V1B1P15313 513 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 ZNF708P17019 499 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 MTNR1AP48039 350 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 STARP49675 285 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 CDH15P55291 814 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 RPS7P62081 194 aaKnown RBP12.85□□□□□ -0.35
SHMT2-208ENST00000553868 RAB40BQ12829 278 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 POU4F2Q12837 409 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 APOFQ13790 326 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 POU4F3Q15319 338 aa12.85□□□□□ -0.35
SHMT2-208ENST00000553868 SLC35D3Q5M8T2 416 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms