RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 WDR76Q9H967 626 aa4.92□□□□□ -1.62
LIMA1-212ENST00000552491 SRA1Q9HD15 236 aaKnown RBP4.92□□□□□ -1.62
LIMA1-212ENST00000552491 LYRM4Q9HD34 91 aa4.92□□□□□ -1.62
LIMA1-212ENST00000552491 MKKSQ9NPJ1 570 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-212ENST00000552491 TAS2R8Q9NYW2 309 aa4.92□□□□□ -1.62
LIMA1-212ENST00000552491 ACTR10Q9NZ32 417 aa4.92□□□□□ -1.62
LIMA1-212ENST00000552491 MYO9BQ13459 2157 aa4.92□□□□□ -1.62
LIMA1-212ENST00000552491 TDRD6O60522 2096 aaKnown RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TRBV5-7A0A0A0MS05 114 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 A6NCN8 305 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 GGT3PA6NGU5 568 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 EIF4E2O60573 245 aaKnown RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 RAD1O60671 282 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 SDC3O75056 442 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 FKTNO75072 461 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 RDH16O75452 317 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 AQP8O94778 261 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 AKR7A3O95154 331 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 EGFP01133 1207 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 APOC3P02656 99 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 GUSBP08236 651 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 GLULP15104 373 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ACTR1BP42025 376 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 KIR3DL2P43630 455 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 GPR143P51810 404 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 PRMT2P55345 433 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 SEC13P55735 322 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 SCAND1P57086 179 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ACTR1AP61163 376 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ENPP2Q13822 863 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ERV3-1Q14264 604 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 GPR18Q14330 331 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 MPPED2Q15777 294 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 C1orf53Q5VUE5 145 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ANKRD16Q6P6B7 361 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TSSK4Q6SA08 328 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 LRRN1Q6UXK5 716 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 SLC16A9Q7RTY1 509 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 CDC20BQ86Y33 519 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 GATSQ8NAP1 163 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 CAMKVQ8NCB2 501 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 LSM14AQ8ND56 463 aaKnown RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 OR6K3Q8NGY3 331 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 OR6N1Q8NGY5 312 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 OR2G2Q8NGZ5 317 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ASB13Q8WXK3 278 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TMEM106AQ96A25 262 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 DNAJA3Q96EY1 480 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 RBM18Q96H35 190 aaKnown RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ADAD1Q96M93 576 aaKnown RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 VSTM2LQ96N03 204 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ZFYVE21Q9BQ24 234 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 PELOQ9BRX2 385 aaKnown RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 MFFQ9GZY8 342 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 BARX1Q9HBU1 254 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF337Q9Y3M9 751 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 HRH3Q9Y5N1 445 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 SPACA6W5XKT8 324 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 FREM3P0C091 2139 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 KIF26BQ2KJY2 2108 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 SEC16AO15027 2179 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TRAV18A0A075B6X5 111 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TBC1D3DA0A087WVF3 549 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TBC1D3IA0A087WXS9 549 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TBC1D3LB9A6J9 549 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 D6RAR5 112 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 NDUFA2O43678 99 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 CDC123O75794 336 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 WISP1O95388 367 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 CSTAP01040 98 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ANXA2P07355 339 aaKnown RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 CSF1P09603 554 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TBC1D3HP0C7X1 549 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 CT45A8P0DMV1 189 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 CT45A9P0DMV2 189 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 GTF2F2P13984 249 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 CSF2RBP32927 897 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 POU3F4P49335 361 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TFF2Q03403 129 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 EGR4Q05215 589 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 RUNX3Q13761 415 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 KIR2DS3Q14952 304 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 NR0B2Q15466 257 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF141Q15928 474 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 DEFB110Q30KQ9 67 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 CT45A2Q5DJT8 189 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TBC1D3CQ6IPX1 549 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 CBLN3Q6UW01 205 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TMEM205Q6UW68 189 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 DPY19L4Q7Z388 723 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF550Q7Z398 422 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF761Q86XN6 746 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF595Q8IYB9 648 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TBC1D3Q8IZP1 549 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 CLEC1AQ8NC01 280 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 OR9A4Q8NGU2 314 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 FOXN4Q96NZ1 517 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 GPX7Q96SL4 187 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 GAS2L1Q99501 681 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ELF4Q99607 663 aaPredicted RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms