RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 H0YIG0 161 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 SSX4O60224 188 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 GABRR1P24046 479 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 RBMS1P29558 406 aaKnown RBP13.68□□□□□ -0.22
CUX1-214ENST00000550008 HERV-K104P61576 105 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 RSU1Q15404 277 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 OR10K2Q6IF99 312 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 GUSBP11Q6P575 273 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 OR1L3Q8NH93 324 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 KCTD12Q96CX2 325 aaKnown RBP13.68□□□□□ -0.22
CUX1-214ENST00000550008 TAS2R8Q9NYW2 309 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 PRAMEF25A6NGN4 478 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 C4orf51C9J302 202 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 MBTPS2O43462 519 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 CSF3P09919 207 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 ZGLP1P0C6A0 271 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 PTHLHP12272 177 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 SERPINA2P20848 420 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 GLP1RP43220 463 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 P2RX1P51575 399 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 TEKQ02763 1124 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 OR5D14Q8NGL3 314 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 RNF170Q96K19 258 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 DCLRE1CQ96SD1 692 aaKnown RBP13.67□□□□□ -0.22
CUX1-214ENST00000550008 DOK1Q99704 481 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 C1orf198Q9H425 327 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 SMOC1Q9H4F8 434 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 CDCP1Q9H5V8 836 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 FGF20Q9NP95 211 aaPredicted RBP13.67□□□□□ -0.22
CUX1-214ENST00000550008 A0A1B0GTH9 108 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 TMEM212A6NML5 194 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 E9PI62 339 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 DSCR3O14972 297 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 CER1O95813 267 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 HTR2AP28223 471 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 SDHAP31040 664 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 RPL27P61353 136 aaKnown RBP13.67□□□□□ -0.22
CUX1-214ENST00000550008 RAB12Q6IQ22 244 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 BOLLQ8N9W6 283 aaKnown RBP13.67□□□□□ -0.22
CUX1-214ENST00000550008 OR1J4Q8NGS1 313 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 ICE1Q9Y2F5 2266 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 TRABD2BA6NFA1 517 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 UBL3O95164 117 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 TCRBP04435 133 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 POU3F2P20265 443 aaPredicted RBP13.67□□□□□ -0.22
CUX1-214ENST00000550008 BCKDHBP21953 392 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 SLC16A9Q7RTY1 509 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 PLCZ1Q86YW0 608 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 BATF2Q8N1L9 274 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 PADI1Q9ULC6 663 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 CACNA1HO95180 2353 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 A6NLC8 198 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 FABP7O15540 132 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 CRYBB2P43320 205 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 BEX5Q5H9J7 111 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 RPS19BP1Q86WX3 136 aaKnown RBP13.67□□□□□ -0.22
CUX1-214ENST00000550008 SELENOIQ9C0D9 397 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 CHRDQ9H2X0 955 aa13.67□□□□□ -0.22
CUX1-214ENST00000550008 MEPEQ9NQ76 525 aaPredicted RBP13.67□□□□□ -0.22
CUX1-214ENST00000550008 MGAMO43451 1857 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 A0A0G2JMZ2 1700 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 CHD5Q8TDI0 1954 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 A0A0B4J2E0 115 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 A0A1B0GX12 115 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 RP2O75695 350 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 SPDEFO95238 335 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 EIF4EP06730 217 aaKnown RBP13.66□□□□□ -0.22
CUX1-214ENST00000550008 CD34P28906 385 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 EVI2BP34910 448 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 RFC3P40938 356 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 GPR176Q14439 515 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 SF3B4Q15427 424 aaKnown RBP eCLIP13.66□□□□□ -0.225e-6■■■■□ 20.8
CUX1-214ENST00000550008 ARIH2OSQ8N7S6 290 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 ZNF565Q8N9K5 539 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 HAVCR1Q96D42 359 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 ZNF681Q96N22 645 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 NYNRINQ9P2P1 1898 aaKnown RBP13.66□□□□□ -0.22
CUX1-214ENST00000550008 M0QYG6 137 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 PSG6Q00889 435 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 FAM189A2Q15884 450 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 FXNQ16595 210 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 H1FNTQ75WM6 255 aaPredicted RBP13.66□□□□□ -0.22
CUX1-214ENST00000550008 ABI3BPQ7Z7G0 1075 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 YRDCQ86U90 279 aaKnown RBP13.66□□□□□ -0.22
CUX1-214ENST00000550008 SMRP1Q8NCR6 262 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 IFI44Q8TCB0 444 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 ASB12Q8WXK4 309 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 VN1R1Q9GZP7 353 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 MLXQ9UH92 298 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 PRAMEF27A3QJZ7 478 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 TEX46H3BTG2 121 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 CTSBP07858 339 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 CDK5R1Q15078 307 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 METTL11BQ5VVY1 283 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 C1QL3Q5VWW1 255 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 ESX1Q8N693 406 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 ZNF611Q8N823 705 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 IL17RDQ8NFM7 739 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 C3orf49Q96BT1 292 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 SEC22CQ9BRL7 303 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms