RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 REEP1Q9H902 201 aa13.75□□□□□ -0.21
RPAIN-206ENST00000539417 CCM2LQ9NUG4 571 aaPredicted RBP13.75□□□□□ -0.21
RPAIN-206ENST00000539417 SPG11Q96JI7 2443 aa13.75□□□□□ -0.21
RPAIN-206ENST00000539417 RAI1Q7Z5J4 1906 aaPredicted RBP13.75□□□□□ -0.21
RPAIN-206ENST00000539417 TEX13CA0A0J9YWL9 993 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 M0R1B8 84 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 EBAG9O00559 213 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 DHHO43323 396 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 TIPRLO75663 272 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 CCNB2O95067 398 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 NDUFB2O95178 105 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 HLA-HP01893 362 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 CD14P08571 375 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 CELA3BP08861 270 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 PRPS1P60891 318 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 TSPAN31Q12999 210 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 MICAQ29983 383 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 ANKDD1AQ495B1 522 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 C1orf146Q5VVC0 180 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 ADAM5Q6NVV9 412 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 ZNF813Q6ZN06 617 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 ZNF704Q6ZNC4 412 aaPredicted RBP13.74□□□□□ -0.21
RPAIN-206ENST00000539417 AQP11Q8NBQ7 271 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 KBTBD8Q8NFY9 601 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 FANK1Q8TC84 345 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 GTPBP3Q969Y2 492 aaKnown RBP13.74□□□□□ -0.21
RPAIN-206ENST00000539417 SAMD8Q96LT4 415 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 GPX7Q96SL4 187 aaPredicted RBP13.74□□□□□ -0.21
RPAIN-206ENST00000539417 FOXB1Q99853 325 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 OR52D1Q9H346 318 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 NTN4Q9HB63 628 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 B3GAT2Q9NPZ5 323 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 NRIP3Q9NQ35 241 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 POFUT2Q9Y2G5 429 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 AMDHD2Q9Y303 409 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 UGT2A1Q9Y4X1 527 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 IER3IP1Q9Y5U9 82 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 MAGED1Q9Y5V3 778 aaPredicted RBP13.74□□□□□ -0.21
RPAIN-206ENST00000539417 OTOGQ6ZRI0 2925 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 CADP27708 2225 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 ARPC4-TTLL3A0A0A6YYG9 625 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 IGHV1-18A0A0C4DH31 117 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 ARHGEF9O43307 516 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 GOSR1O95249 250 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 PPP1R3DO95685 299 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 TP53P04637 393 aaPredicted RBP13.74□□□□□ -0.21
RPAIN-206ENST00000539417 CDAP32320 146 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 ZNF133P52736 654 aaPredicted RBP13.74□□□□□ -0.21
RPAIN-206ENST00000539417 SH3BGRP55822 239 aaPredicted RBP13.74□□□□□ -0.21
RPAIN-206ENST00000539417 ETFDHQ16134 617 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 SLC25A47Q6Q0C1 308 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 SMARCD3Q6STE5 483 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 ZNF620Q6ZNG0 422 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 PTCHD4Q6ZW05 846 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 ZNF627Q7L945 461 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 SKA3Q8IX90 412 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 ARIH2OSQ8N7S6 290 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 OR8D4Q8NGM9 314 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 MAGEE2Q8TD90 523 aaPredicted RBP13.74□□□□□ -0.21
RPAIN-206ENST00000539417 NSMAFQ92636 917 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 SH3GL3Q99963 347 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 NIPSNAP1Q9BPW8 284 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 PLA2G12AQ9BZM1 189 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 MMADHCQ9H3L0 296 aaPredicted RBP13.74□□□□□ -0.21
RPAIN-206ENST00000539417 UBTD1Q9HAC8 227 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 TMEM38BQ9NVV0 291 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 PLEKHA6Q9Y2H5 1048 aa13.74□□□□□ -0.21
RPAIN-206ENST00000539417 VPS13CQ709C8 3753 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 ANKRD17O75179 2603 aaKnown RBP13.73□□□□□ -0.21
RPAIN-206ENST00000539417 ROS1P08922 2347 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 SHISA9B4DS77 424 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 SOCS2O14508 198 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 ABCD4O14678 606 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 CD3EP07766 207 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 PRKACGP22612 351 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 CD40P25942 277 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 PIGFQ07326 219 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 CD47Q08722 323 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 TAF11Q15544 211 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 RFX4Q33E94 735 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 CDH24Q86UP0 819 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 MDP1Q86V88 176 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 OR10G2Q8NGC3 310 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 POP5Q969H6 163 aaKnown RBP13.73□□□□□ -0.21
RPAIN-206ENST00000539417 ZNF75AQ96N20 296 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 ZNF570Q96NI8 536 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 ESRP2Q9H6T0 727 aaKnown RBP13.73□□□□□ -0.21
RPAIN-206ENST00000539417 KRCC1Q9NPI7 259 aaPredicted RBP13.73□□□□□ -0.21
RPAIN-206ENST00000539417 B3GNT2Q9NY97 397 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 GRHPRQ9UBQ7 328 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 RNF115Q9Y4L5 304 aa13.73□□□□□ -0.21
RPAIN-206ENST00000539417 SCG5P05408 212 aa13.72□□□□□ -0.21
RPAIN-206ENST00000539417 CDKN2AP42771 156 aaKnown RBP13.72□□□□□ -0.21
RPAIN-206ENST00000539417 NR1H2P55055 460 aa13.72□□□□□ -0.21
RPAIN-206ENST00000539417 UBE2NP61088 152 aaKnown RBP13.72□□□□□ -0.21
RPAIN-206ENST00000539417 KRR1Q13601 381 aaKnown RBP13.72□□□□□ -0.21
RPAIN-206ENST00000539417 C10orf128Q5T292 105 aa13.72□□□□□ -0.21
RPAIN-206ENST00000539417 OTPQ5XKR4 325 aa13.72□□□□□ -0.21
RPAIN-206ENST00000539417 B3GLCTQ6Y288 498 aa13.72□□□□□ -0.21
RPAIN-206ENST00000539417 DPY19L2P2Q6ZN68 376 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms