RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 MAB21L1Q13394 359 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 SLC9A3R2Q15599 337 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ETFDHQ16134 617 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 MPEG1Q2M385 716 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 OR6Q1Q8NGQ2 317 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 FAM120BQ96EK7 910 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 MISP3Q96FF7 219 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 SLC35A5Q9BS91 424 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 PINK1Q9BXM7 581 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 NT5DC2Q9H857 520 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 EXO1Q9UQ84 846 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 TRGV5A0A0B4J1U4 118 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 TMEM200CA6NKL6 621 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 TSTD3H0UI37 97 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 EIF1AYO14602 144 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 PTTG1O95997 202 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 SBK2P0C263 348 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 GKN3PP0CG01 181 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 SPP1P10451 314 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 COX4I1P13073 169 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 IL7RP16871 459 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 DPP4P27487 766 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 RBM34P42696 430 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 EMDP50402 254 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 CSRP3P50461 194 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 MYBPHQ13203 477 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 TBCELQ5QJ74 424 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 MRM1Q6IN84 353 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 ATRAIDQ6UW56 229 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 SELENOHQ8IZQ5 122 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 SLC7A6Q92536 515 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 NRGNQ92686 78 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 WDR34Q96EX3 536 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 RTN4RQ9BZR6 473 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 NCOR1P1Q9H4R4 102 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 BRF2Q9HAW0 419 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 CBLCQ9ULV8 474 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 MAB21L2Q9Y586 359 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 C2CD3Q4AC94 2353 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 FAM240BA0A1B0GVZ2 78 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 DUXAA6NLW8 204 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 ZNF729A6NN14 1252 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 GADD45GO95257 159 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 CRYABP02511 175 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 FGF4P08620 206 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 IGFBP1P08833 259 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 PRPS2P11908 318 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 RAB4AP20338 218 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 GRNP28799 593 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 TGFBR1P36897 503 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 DNAJB13P59910 316 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 CDSNQ15517 529 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 OR8G1Q15617 311 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 GXYLT1Q4G148 440 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 FAM71E1Q6IPT2 247 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 C11orf88Q6PI97 169 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 CREB3L2Q70SY1 520 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 C6orf120Q7Z4R8 191 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 SPAG16Q8N0X2 631 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 LILRA2Q8N149 483 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 EIF1ADQ8N9N8 165 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 OR4M2Q8NGB6 313 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 RHOXF1Q8NHV9 184 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 SLC25A36Q96CQ1 311 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 CHIAQ9BZP6 476 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 ANKRD17O75179 2603 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 LOC102723996A0A087X1L8 192 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 A0A1W2PNR3 127 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 A0A1W2PPL8 197 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 SDHDO14521 159 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 GNGT2O14610 69 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 ETFAP13804 333 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 MTPNP58546 118 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 TRA2BP62995 288 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 PRR5P85299 388 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 SYPL1Q16563 259 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 PDZD11Q5EBL8 140 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 RPL13AP3Q6NVV1 102 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 CBLN3Q6UW01 205 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 NPSR1Q6W5P4 371 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 SLC46A3Q7Z3Q1 461 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 MORN4Q8NDC4 146 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 CHDHQ8NE62 594 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 OR10J5Q8NHC4 309 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 SLC35G5Q96KT7 338 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 SARGQ9BW04 601 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 OR51I1Q9H343 314 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 TMEM138Q9NPI0 162 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 BABAM2Q9NXR7 383 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 CD300AQ9UGN4 299 aa7.13□□□□□ -1.27
LIMCH1-219ENST00000514096 PNMA8CA0A1B0GUJ8 204 aa7.12□□□□□ -1.27
LIMCH1-219ENST00000514096 C5orf58C9J3I9 102 aa7.12□□□□□ -1.27
LIMCH1-219ENST00000514096 XPNPEP2O43895 674 aa7.12□□□□□ -1.27
LIMCH1-219ENST00000514096 BCHEP06276 602 aa7.12□□□□□ -1.27
LIMCH1-219ENST00000514096 CD2P06729 351 aa7.12□□□□□ -1.27
LIMCH1-219ENST00000514096 NQO2P16083 231 aa7.12□□□□□ -1.27
LIMCH1-219ENST00000514096 GPX3P22352 226 aa7.12□□□□□ -1.27
LIMCH1-219ENST00000514096 DDOSTP39656 456 aa7.12□□□□□ -1.27
LIMCH1-219ENST00000514096 FABP9Q0Z7S8 132 aa7.12□□□□□ -1.27
LIMCH1-219ENST00000514096 ELP2Q6IA86 826 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms