RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	SLC35F5	Q8WV83	523 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	KCTD4	Q8WVF5	259 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ACOT11	Q8WXI4	607 aa	Predicted RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	HSD17B8	Q92506	261 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	PIK3R3	Q92569	461 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	DAZL	Q92904	295 aa	Known RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	NAT6	Q93015	286 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	PYCR2	Q96C36	320 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	C8orf44	Q96CB5	159 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	YIPF6	Q96EC8	236 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	L3HYPDH	Q96EM0	354 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	SCRN2	Q96FV2	425 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	JSRP1	Q96MG2	331 aa	Predicted RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	AGAP4	Q96P64	663 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	TSSK3	Q96PN8	268 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	MCCC1	Q96RQ3	725 aa	Predicted RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	WDR77	Q9BQA1	342 aa	Predicted RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	WAC	Q9BTA9	647 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	UGT2B28	Q9BY64	529 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	SLITRK2	Q9H156	845 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	PIGU	Q9H490	435 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	POMK	Q9H5K3	350 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ASB7	Q9H672	318 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	KAT8	Q9H7Z6	458 aa	Known RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	LPAR2	Q9HBW0	351 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	CHST11	Q9NPF2	352 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	GPATCH2L	Q9NWQ4	482 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	CMTM6	Q9NX76	183 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	SCN3B	Q9NY72	215 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ZNF282	Q9UDV7	671 aa	Predicted RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ERVW-1	Q9UQF0	538 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	STARD10	Q9Y365	291 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	TRIP11	Q15643	1979 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	IGKV6D-21	A0A0A0MT36	114 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	KBTBD11-OT1	A0A1B0GTJ5	212 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	MTMR11	A4FU01	709 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	HEPACAM2	A8MVW5	462 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592		F8VVB4	439 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592		F8VWA3	439 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592		G3V2T6	193 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	FXYD1	O00168	92 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	SLC1A7	O00341	560 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	RFXANK	O14593	260 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	LDB2	O43679	373 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	EED	O75530	441 aa	Known RBP	4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	OR2J3	O76001	311 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	OAZ2	O95190	189 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	CRYZL1	O95825	349 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	CLIC3	O95833	236 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	TOMM40	O96008	361 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	IGHV2-70	P01814	119 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	IL1RN	P18510	177 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	G0S2	P27469	103 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	ELK4	P28324	431 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	TEAD1	P28347	426 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	PPP2R1B	P30154	601 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	BDKRB2	P30411	391 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	RCVRN	P35243	200 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	PTGER4	P35408	488 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	CD79B	P40259	229 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	ETV6	P41212	452 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	NR4A2	P43354	598 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	YAP1	P46937	504 aa	Known RBP	4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	PPP3CC	P48454	512 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	RPL34	P49207	117 aa	Known RBP	4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	DUSP3	P51452	185 aa	Predicted RBP	4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	CCR8	P51685	355 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	ATP5J2	P56134	94 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	COPZ1	P61923	177 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	RPS6	P62753	249 aa	Known RBP	4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	PPIA	P62937	165 aa	Known RBP	4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	HERVK_113	P63132	956 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	ERVK-25	P63136	954 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	FKBP1B	P68106	108 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	EMX2	Q04743	252 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	CRYZ	Q08257	329 aa	Known RBP	4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	TRAF3	Q13114	568 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	PTGR1	Q14914	329 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	EFNB3	Q15768	340 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	ZNF404	Q494X3	552 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	CCDC58	Q4VC31	144 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	ACTBL2	Q562R1	376 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	TECRL	Q5HYJ1	363 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	CELF3	Q5SZQ8	465 aa	Known RBP	4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	FAM69B	Q5VUD6	431 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	ZNF770	Q6IQ21	691 aa	Predicted RBP	4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	CAPN13	Q6MZZ7	669 aa	Predicted RBP	4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	CES5A	Q6NT32	575 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	XKRX	Q6PP77	449 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	ASCL4	Q6XD76	172 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	GCNT7	Q6ZNI0	430 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	IDO2	Q6ZQW0	420 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	GOLGA7	Q7Z5G4	137 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	NOXA1	Q86UR1	476 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	GLCCI1	Q86VQ1	547 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	UNC93A	Q86WB7	457 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	PTOV1	Q86YD1	416 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	HIPK1	Q86Z02	1210 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	TMC8	Q8IU68	726 aa		4.23	□□□□□ -1.73
RTN4-215	ENST00000491592	FUNDC1	Q8IVP5	155 aa		4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms