RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 RPA3P35244 121 aaPredicted RBP3.29□□□□□ -1.88
PTCD3-216ENST00000487043 NSG1P42857 185 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 MAGEA5P43359 124 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 MAGEA9P43362 315 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 PSMD8P48556 350 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 SERPINB8P50452 374 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 RIDAP52758 137 aaKnown RBP3.29□□□□□ -1.88
PTCD3-216ENST00000487043 IL9RQ01113 521 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 CD226Q15762 336 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 CHI3L2Q15782 390 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 UBE2V2Q15819 145 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 TATDN3Q17R31 274 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 CCDC153Q494R4 210 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 FAM74A3Q4VXF1 159 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 HENMT1Q5T8I9 393 aaKnown RBP3.29□□□□□ -1.88
PTCD3-216ENST00000487043 BTNL3Q6UXE8 466 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 HACD2Q6Y1H2 254 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 RFLNAQ6ZTI6 216 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 PRSS48Q7RTY5 328 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 CMC1Q7Z7K0 106 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 LRRTM1Q86UE6 522 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 SERPINA9Q86WD7 417 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 UBALD2Q8IYN6 164 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 TRAM1L1Q8N609 369 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 Q8NBF4 154 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 CXorf40AQ8TE69 158 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 BIRC8Q96P09 236 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 COPS8Q99627 209 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 FAM173AQ9BQD7 235 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 SELENOSQ9BQE4 189 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 ST6GALNAC5Q9BVH7 336 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 RIOK2Q9BVS4 552 aaKnown RBP3.29□□□□□ -1.88
PTCD3-216ENST00000487043 RBM4Q9BWF3 364 aaKnown RBP3.29□□□□□ -1.88
PTCD3-216ENST00000487043 SPATA16Q9BXB7 569 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 CAPS2Q9BXY5 557 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 BARHL1Q9BZE3 327 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 VCX2Q9H322 139 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 CAB39LQ9H9S4 337 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 MEAF6Q9HAF1 191 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 SMOXQ9NWM0 555 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 FBXL12Q9NXK8 326 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 NKIRAS1Q9NYS0 192 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 TMEM216Q9P0N5 145 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 SLC17A7Q9P2U7 560 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 CD84Q9UIB8 345 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 CRLS1Q9UJA2 301 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 RARRES3Q9UL19 164 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 NDRG2Q9UN36 371 aaKnown RBP3.29□□□□□ -1.88
PTCD3-216ENST00000487043 MRPS33Q9Y291 106 aaKnown RBP3.29□□□□□ -1.88
PTCD3-216ENST00000487043 DHRS7Q9Y394 339 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 ATG2BQ96BY7 2078 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 SCN8AQ9UQD0 1980 aa3.29□□□□□ -1.88
PTCD3-216ENST00000487043 ZNF106Q9H2Y7 1883 aaKnown RBP3.28□□□□□ -1.88
PTCD3-216ENST00000487043 XIRP2A4UGR9 3374 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 A0A087WYN8 130 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 PPIAL4CA0A0B4J2A2 164 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 GSAPA4D1B5 854 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 GMNCA6NCL1 334 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 ERICH4A6NGS2 130 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 C10orf142B7Z368 130 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 BIRC5O15392 142 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 DCXO43602 365 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 PLIN3O60664 434 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 SHOX2O60902 331 aaPredicted RBP3.28□□□□□ -1.88
PTCD3-216ENST00000487043 NIPSNAP2O75323 286 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 SLC25A14O95258 325 aaPredicted RBP3.28□□□□□ -1.88
PTCD3-216ENST00000487043 NUDT14O95848 222 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 SOD1P00441 154 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 IGLV3-19P01714 112 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 IGHG1P01857 330 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 OPN1MWP04001 364 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 BPGMP07738 259 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 RBP1P09455 135 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 OR56A5P0C7T3 313 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 CCDC166P0CW27 439 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 PPIAL4GP0DN37 164 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 OPN1MW2P0DN77 364 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 OPN1MW3P0DN78 364 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 RALBP11234 206 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 ATP1B2P14415 290 aaPredicted RBP3.28□□□□□ -1.88
PTCD3-216ENST00000487043 GABRG2P18507 467 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 HNF1AP20823 631 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 TEAD1P28347 426 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 PBLDP30039 288 aaPredicted RBP3.28□□□□□ -1.88
PTCD3-216ENST00000487043 GPR1P46091 355 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 RPS9P46781 194 aaKnown RBP3.28□□□□□ -1.88
PTCD3-216ENST00000487043 ATP4BP51164 291 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 TPMTP51580 245 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 CDKN2DP55273 166 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 ATP6V0D1P61421 351 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 GNGT1P63211 74 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 RPS21P63220 83 aaKnown RBP3.28□□□□□ -1.88
PTCD3-216ENST00000487043 ZNF85Q03923 595 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 RAB35Q15286 201 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 ZSCAN26Q16670 478 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 FAM83EQ2M2I3 478 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 KRTAP24-1Q3LI83 254 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 CTSL3PQ5NE16 218 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 ACER2Q5QJU3 275 aa3.28□□□□□ -1.88
PTCD3-216ENST00000487043 SPATA46Q5T0L3 261 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms