RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 REPIN1Q9BWE0 567 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 ARGLU1Q9NWB6 273 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 FBXL3Q9UKT7 428 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 SH3GLB1Q9Y371 365 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 SPEF1Q9Y4P9 236 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 LYNX1G3V0Z9 82 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 M0R233 179 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 DHHO43323 396 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 SHOX2O60902 331 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 TGFAP01135 160 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 MT-ND1P03886 318 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 HIST1H2ABP04908 130 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 SERPINA5P05154 406 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 OR8G3PP0DMU2 310 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 LYNX1P0DP58 116 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 UMPSP11172 480 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 ALDH3B1P43353 468 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 RPL18Q07020 188 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 TRIP10Q15642 601 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 REP15Q6BDI9 236 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 HIST3H2AQ7L7L0 130 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 NKAIN4Q8IVV8 208 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 PAQR4Q8N4S7 273 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 UBASH3BQ8TF42 649 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 HIST1H2ACQ93077 130 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 ZNF583Q96ND8 569 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 SNX18Q96RF0 628 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 MRPL13Q9BYD1 178 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 C20orf141Q9NUB4 165 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 FZR1Q9UM11 496 aa16.15■□□□□ 0.18
CCDC88B-206ENST00000473405 BLOC1S5-TXNDC5H3BN57 136 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 MRASO14807 208 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 IGHG1P01857 330 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 F13BP05160 661 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 QDPRP09417 244 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 TSPAN19P0C672 248 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 SRD5A1P18405 259 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 THBS2P35442 1172 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 RBM34P42696 430 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 CHN2P52757 468 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 RPS23P62266 143 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 GALK2Q01415 458 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 KLF10Q13118 480 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 MAD2L1BPQ15013 274 aaPredicted RBP16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 ELFN2Q5R3F8 820 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 GKAP1Q5VSY0 366 aaPredicted RBP16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 DEF8Q6ZN54 512 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 NOXO1Q8NFA2 376 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 OR4K5Q8NGD3 323 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 ASB10Q8WXI3 467 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 ZNF347Q96SE7 839 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 SH3GL1Q99961 368 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 ECSITQ9BQ95 431 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 POLR2J2Q9GZM3 115 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 POLR2J3Q9H1A7 115 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 SAR1AQ9NR31 198 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 FGFR1OP2Q9NVK5 253 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 REV1Q9UBZ9 1251 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 SLC7A8Q9UHI5 535 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 BAG5Q9UL15 447 aa16.14■□□□□ 0.17
CCDC88B-206ENST00000473405 BBIP1A8MTZ0 92 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 OR7A10O76100 309 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 OR5F1O95221 314 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 BCL10O95999 233 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 NPPAP01160 153 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 IGF2P01344 180 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 OR1E2P47887 323 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 SEC24CP53992 1094 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 TAS2R41P59536 307 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 PIN1Q13526 163 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 SLC30A7Q8NEW0 376 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 C10orf82Q8WW14 230 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 HPS1Q92902 700 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 MCHR2Q969V1 340 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 RIMS3Q9UJD0 308 aa16.13■□□□□ 0.17
CCDC88B-206ENST00000473405 A0A1W2PRG6 482 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 ENTPD5O75356 428 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 NCR1O76036 304 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 HPXP02790 462 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 TROVE2P10155 538 aaKnown RBP eCLIP16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 CCL2P13500 99 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 FUT1P19526 365 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 TCN1P20061 433 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 APEX1P27695 318 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 AQP2P41181 271 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 ZNF133P52736 654 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 CLRN1P58418 232 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 MYBPC1Q00872 1141 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 SF3A3Q12874 501 aaKnown RBP eCLIP16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 KRTAP24-1Q3LI83 254 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 MMEL1Q495T6 779 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 NRN1LQ496H8 165 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 ERICH5Q6P6B1 374 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 SYT14Q8NB59 555 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 MOSPD2Q8NHP6 518 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 TMEM239Q8WW34 195 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 LIPHQ8WWY8 451 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 SGTBQ96EQ0 304 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 C1orf159Q96HA4 380 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 MS4A5Q9H3V2 200 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms