RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 PRICKLE3O43900 615 aaPredicted RBP9.72□□□□□ -0.85
USP54-204ENST00000422491 SSX5O60225 188 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 ALOX12BO75342 701 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 AMY2AP04746 511 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 S100A9P06702 114 aaKnown RBP9.72□□□□□ -0.85
USP54-204ENST00000422491 TACSTD2P09758 323 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 PAX6P26367 422 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 ACAA2P42765 397 aaKnown RBP9.72□□□□□ -0.85
USP54-204ENST00000422491 ZNF234Q14588 700 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 PEA15Q15121 130 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 ALG11Q2TAA5 492 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 MST1LQ2TV78 715 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 C5orf46Q6UWT4 87 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 DPY19L2P2Q6ZN68 376 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 USP53Q70EK8 1073 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 ANKRD33Q7Z3H0 272 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 FAM220AQ7Z4H9 259 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 ZAR1Q86SH2 424 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 COX18Q8N8Q8 333 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 INO80EQ8NBZ0 244 aaPredicted RBP9.72□□□□□ -0.85
USP54-204ENST00000422491 OR2L3Q8NG85 312 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 OR2L8Q8NGY9 312 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 RNF141Q8WVD5 230 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 MCHR2Q969V1 340 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 ZBTB8AQ96BR9 441 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 RASD2Q96D21 266 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 NRIP2Q9BQI9 281 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 ALG12Q9BV10 488 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 ADAP2Q9NPF8 381 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 DUSP22Q9NRW4 184 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 RCC2Q9P258 522 aaKnown RBP9.72□□□□□ -0.85
USP54-204ENST00000422491 C19orf53Q9UNZ5 99 aaPredicted RBP9.72□□□□□ -0.85
USP54-204ENST00000422491 ARPC3O15145 178 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 KCNAB3O43448 404 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 BRINP1O60477 761 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 CDC40O60508 579 aaKnown RBP eCLIP9.71□□□□□ -0.85
USP54-204ENST00000422491 AK1P00568 194 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 FAM157CP0CG43 387 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 ADRB3P13945 408 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 ZBTB25P24278 435 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 RPL4P36578 427 aaKnown RBP9.71□□□□□ -0.85
USP54-204ENST00000422491 PRKXP51817 358 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 PRKCZQ05513 592 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 OR7A5Q15622 319 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 GFOD2Q3B7J2 385 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 C2orf76Q3KRA6 126 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 ADAMTSL4Q6UY14 1074 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 IL34Q6ZMJ4 242 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 PARGQ86W56 976 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 ZNF511Q8NB15 262 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 MFSD9Q8NBP5 474 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 PHOSPHO1Q8TCT1 267 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 EDARADDQ8WWZ3 215 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 SLC17A5Q9NRA2 495 aa9.71□□□□□ -0.85
USP54-204ENST00000422491 CDV3Q9UKY7 258 aaKnown RBP9.71□□□□□ -0.85
USP54-204ENST00000422491 LOC100289279A0A1B0GTE1 492 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 C1QTNF3-AMACRE9PGA6 284 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 IGHV2-70P01814 119 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 PRNPP04156 253 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 TPT1P13693 172 aaKnown RBP9.71□□□□□ -0.86
USP54-204ENST00000422491 ELNP15502 786 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 CBR1P16152 277 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 PTAFRP25105 342 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 PEBP1P30086 187 aaKnown RBP9.71□□□□□ -0.86
USP54-204ENST00000422491 VASPP50552 380 aaPredicted RBP9.71□□□□□ -0.86
USP54-204ENST00000422491 DMWDQ09019 674 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 PJVKQ0ZLH3 352 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 GXYLT1Q4G148 440 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 ARHGAP40Q5TG30 622 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 SLC16A9Q7RTY1 509 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 SLC39A11Q8N1S5 342 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 FAM3DQ96BQ1 224 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 INTS12Q96CB8 462 aaKnown RBP9.71□□□□□ -0.86
USP54-204ENST00000422491 MIOXQ9UGB7 285 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 VSIG4Q9Y279 399 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 PLEKHA6Q9Y2H5 1048 aa9.71□□□□□ -0.86
USP54-204ENST00000422491 A0A1W2PQ45 241 aaPredicted RBP9.7□□□□□ -0.86
USP54-204ENST00000422491 A0A1W2PQY0 241 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 MANSC4A6NHS7 340 aaPredicted RBP9.7□□□□□ -0.86
USP54-204ENST00000422491 C4orf47A7E2U8 309 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 PGAM2P15259 253 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 ZNF44P15621 663 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 ABCD3P28288 659 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 CDK3Q00526 305 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 NAAAQ02083 359 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 ISXQ2M1V0 245 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 PRAMEF17Q5VTA0 474 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 FAM166AQ6J272 317 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 MTSS1LQ765P7 747 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 C12orf40Q86WS4 652 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 BAP18Q8IXM2 172 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 SAMD14Q8IZD0 417 aaPredicted RBP9.7□□□□□ -0.86
USP54-204ENST00000422491 ZSCAN1Q8NBB4 408 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 OR2G2Q8NGZ5 317 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 STACQ99469 402 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 SEMA6CQ9H3T2 930 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 TEX13DA0A0J9YY54 714 aaPredicted RBP9.7□□□□□ -0.86
USP54-204ENST00000422491 H3BSH0 61 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 ZNF432O94892 652 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 IL2RAP01589 272 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms