RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 DDTLA6NHG4 134 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-203ENST00000353578 CCDC116Q8IYX3 515 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 BOLA1Q9Y3E2 137 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 SLC31A2O15432 143 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 KRTDAPP60985 99 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 NPY5RQ15761 445 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 OR52I1Q8NGK6 324 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 OR6K2Q8NGY2 324 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 CPPED1Q9BRF8 314 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-203ENST00000353578 SGPP1Q9BX95 441 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 LIN7CQ9NUP9 197 aaKnown RBP11.69□□□□□ -0.54
COL6A3-203ENST00000353578 SLC7A7Q9UM01 511 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 A0A1W2PPQ1 181 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 HOXA10P31260 410 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-203ENST00000353578 RPL29P47914 159 aaKnown RBP11.69□□□□□ -0.54
COL6A3-203ENST00000353578 PIGPP57054 158 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 ARL16Q0P5N6 197 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 TP53I3Q53FA7 332 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 ZNF66Q6ZN08 573 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 ERASQ7Z444 233 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 OR4B1Q8NGF8 309 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 SMIM19Q96E16 107 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 SDSLQ96GA7 329 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 PLEKHF2Q9H8W4 249 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 PADI1Q9ULC6 663 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 MED1Q15648 1581 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-203ENST00000353578 RIMBP3CA6NJZ7 1639 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 RIMBP3BA6NNM3 1639 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 RIMBP3Q9UFD9 1639 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 NACAE9PAV3 2078 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 ZCWPW2A0A1B0GU75 182 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 NDUFS8O00217 210 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 IRF2P14316 349 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 CDKN2DP55273 166 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 CTXN1P60606 82 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 SOWAHAQ2M3V2 549 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 DPY19L2P2Q6ZN68 376 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 OR14A16Q8NHC5 309 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 RBM14Q96PK6 669 aaKnown RBP11.68□□□□□ -0.54
COL6A3-203ENST00000353578 OR2A14Q96R47 310 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 RIMS4Q9H426 269 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-203ENST00000353578 IGFBP1P08833 259 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-203ENST00000353578 AKR1C1Q04828 323 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 ZNF787Q6DD87 383 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 LRRTM1Q86UE6 522 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 GMPPAQ96IJ6 420 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-203ENST00000353578 HHIPL1Q96JK4 782 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 BMP5P22003 454 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 GDF5P43026 501 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 PCBP4P57723 403 aaKnown RBP11.68□□□□□ -0.54
COL6A3-203ENST00000353578 ERVPABLB-1P60509 514 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 DOC2AQ14183 400 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 PRAMEF18Q5VWM3 479 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 C11orf87Q6NUJ2 197 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 SLC38A9Q8NBW4 561 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 CAPNS2Q96L46 248 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 TMEM81Q6P7N7 255 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 ZNF429Q86V71 674 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 MCATQ8IVS2 390 aaKnown RBP11.68□□□□□ -0.54
COL6A3-203ENST00000353578 ANGPTL4Q9BY76 406 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 FBXO34Q9NWN3 711 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 TMEM238LA0A1B0GVL6 79 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 A6NJY4 79 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 DDTP30046 118 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 TARBP2Q15633 366 aaKnown RBP11.68□□□□□ -0.54
COL6A3-203ENST00000353578 EIF4E3Q8N5X7 224 aaKnown RBP11.68□□□□□ -0.54
COL6A3-203ENST00000353578 DTWD2Q8NBA8 298 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 ARL2-SNX15V9GYD0 113 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 MCM3APO60318 1980 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 XRCC3O43542 346 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 PLRG1O43660 514 aaKnown RBP11.68□□□□□ -0.54
COL6A3-203ENST00000353578 OR8D4Q8NGM9 314 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 GPR61Q9BZJ8 451 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 RGPD5Q99666 1765 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 TMEM107Q6UX40 140 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 LMO3Q8TAP4 145 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 SNX11Q9Y5W9 270 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 RGPD8O14715 1765 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-203ENST00000353578 DHODHQ02127 395 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 ESAMQ96AP7 390 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 SENP5Q96HI0 755 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-203ENST00000353578 EMCNQ9ULC0 261 aa11.68□□□□□ -0.54
COL6A3-203ENST00000353578 SCGB1C2P0DMR2 95 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 NKX2-1P43699 371 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-203ENST00000353578 TMEM128Q5BJH2 165 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 PM20D1Q6GTS8 502 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 SLC26A10Q8NG04 563 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 SUSD3Q96L08 255 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 C2orf50Q96LR7 162 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 GPR20Q99678 358 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 C20orf24Q9BUV8 137 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 SLIRPQ9GZT3 109 aaKnown RBP11.67□□□□□ -0.54
COL6A3-203ENST00000353578 NKX2-4Q9H2Z4 354 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 PPM1DO15297 605 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 ELAVL4P26378 380 aaKnown RBP11.67□□□□□ -0.54
COL6A3-203ENST00000353578 GKN2Q86XP6 184 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 OR51S1Q8NGJ8 323 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 ZMYND19Q96E35 227 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-203ENST00000353578 Q9N2K0 584 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 KCNK6Q9Y257 313 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms