RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RPS27AP62979 156 aaKnown RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 UBA52P62987 128 aaKnown RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 SLC25A35Q3KQZ1 300 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 TMEM244Q5VVB8 128 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 OR9K2Q8NGE7 335 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 PATE1Q8WXA2 126 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 AKIP1Q9NQ31 210 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 SLC2A4RGQ9NR83 387 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 TAAR2Q9P1P5 351 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 C19orf25Q9UFG5 118 aaPredicted RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 NXT1Q9UKK6 140 aaKnown RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 RBBP6Q7Z6E9 1792 aaKnown RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 ZNF831Q5JPB2 1677 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 TRAV20A0A0B4J274 112 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 A0A1W2PPV4 95 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 TCRBV5S2A0A599 114 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 HIDE1A8MVS5 230 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 EIF3FO00303 357 aaPredicted RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 CYTIPO60759 359 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 SYNGR4O95473 234 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 TGM6O95932 706 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 RAF1P04049 648 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 CA3P07451 260 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 TAGLN2P37802 199 aaKnown RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 PCBP3P57721 371 aaKnown RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 MALLQ13021 153 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 ADIRFQ15847 76 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 HAGHQ16775 308 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 MBOAT2Q6ZWT7 520 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 GAREM2Q75VX8 874 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 SMIM15Q7Z3B0 74 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 TMEM123Q8N131 208 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 FAM71CQ8NEG0 241 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 ZFAND1Q8TCF1 268 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 MARC2Q969Z3 335 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 C1QTNF3Q9BXJ4 246 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 EXO1Q9UQ84 846 aaKnown RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 DUSP5Q16690 384 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 HIST2H3AQ71DI3 136 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 ANGPTL5Q86XS5 388 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 FAM185AQ8N0U4 392 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 L3MBTL4Q8NA19 623 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 NUDCD2Q8WVJ2 157 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 DPF1Q92782 380 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 TVP23CQ96ET8 276 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 WDR89Q96FK6 387 aaPredicted RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 NKX6-2Q9C056 277 aaPredicted RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 COL2A1P02458 1487 aaPredicted RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 MEX3AA1L020 520 aaKnown RBP8□□□□□ -1.13
RTN3-202ENST00000339997 CEBPZOSA8MTT3 80 aa8□□□□□ -1.13
RTN3-202ENST00000339997 PHYHO14832 338 aa8□□□□□ -1.13
RTN3-202ENST00000339997 SNAPC5O75971 98 aa8□□□□□ -1.13
RTN3-202ENST00000339997 SBK2P0C263 348 aa8□□□□□ -1.13
RTN3-202ENST00000339997 NME1P15531 152 aaKnown RBP8□□□□□ -1.13
RTN3-202ENST00000339997 HTR1FP30939 366 aa8□□□□□ -1.13
RTN3-202ENST00000339997 RFX2P48378 723 aa8□□□□□ -1.13
RTN3-202ENST00000339997 MTNR1BP49286 362 aa8□□□□□ -1.13
RTN3-202ENST00000339997 MEF2DQ14814 521 aa8□□□□□ -1.13
RTN3-202ENST00000339997 RNLSQ5VYX0 342 aa8□□□□□ -1.13
RTN3-202ENST00000339997 MOB3CQ70IA8 216 aa8□□□□□ -1.13
RTN3-202ENST00000339997 MRPL21Q7Z2W9 205 aaKnown RBP8□□□□□ -1.13
RTN3-202ENST00000339997 MRPL10Q7Z7H8 261 aaKnown RBP8□□□□□ -1.13
RTN3-202ENST00000339997 FJX1Q86VR8 437 aa8□□□□□ -1.13
RTN3-202ENST00000339997 PLPP5Q8NEB5 264 aa8□□□□□ -1.13
RTN3-202ENST00000339997 ZNF296Q8WUU4 475 aaPredicted RBP8□□□□□ -1.13
RTN3-202ENST00000339997 RNF141Q8WVD5 230 aa8□□□□□ -1.13
RTN3-202ENST00000339997 RSPRY1Q96DX4 576 aa8□□□□□ -1.13
RTN3-202ENST00000339997 SEMA6CQ9H3T2 930 aa8□□□□□ -1.13
RTN3-202ENST00000339997 FBXO8Q9NRD0 319 aa8□□□□□ -1.13
RTN3-202ENST00000339997 KCNIP1Q9NZI2 227 aa8□□□□□ -1.13
RTN3-202ENST00000339997 CAMK2AQ9UQM7 478 aa8□□□□□ -1.13
RTN3-202ENST00000339997 GPR55Q9Y2T6 319 aaPredicted RBP8□□□□□ -1.13
RTN3-202ENST00000339997 A0A0D9SG52 128 aa8□□□□□ -1.13
RTN3-202ENST00000339997 ZNF816-ZNF321PA0A0X1KG74 233 aa8□□□□□ -1.13
RTN3-202ENST00000339997 H0Y8X5 98 aa8□□□□□ -1.13
RTN3-202ENST00000339997 PHF1O43189 567 aaPredicted RBP8□□□□□ -1.13
RTN3-202ENST00000339997 XRCC3O43542 346 aa8□□□□□ -1.13
RTN3-202ENST00000339997 TMPRSS11DO60235 418 aa8□□□□□ -1.13
RTN3-202ENST00000339997 OR2T7P0C7T2 308 aa8□□□□□ -1.13
RTN3-202ENST00000339997 RAC2P15153 192 aa8□□□□□ -1.13
RTN3-202ENST00000339997 CR2P20023 1033 aa8□□□□□ -1.13
RTN3-202ENST00000339997 C5AR1P21730 350 aa8□□□□□ -1.13
RTN3-202ENST00000339997 S100A7P31151 101 aa8□□□□□ -1.13
RTN3-202ENST00000339997 MRPS10P82664 201 aaKnown RBP8□□□□□ -1.13
RTN3-202ENST00000339997 IKZF1Q13422 519 aa8□□□□□ -1.13
RTN3-202ENST00000339997 PLCXD3Q63HM9 321 aa8□□□□□ -1.13
RTN3-202ENST00000339997 ZNF321PQ8N8H1 164 aa8□□□□□ -1.13
RTN3-202ENST00000339997 OR6M1Q8NGM8 313 aa8□□□□□ -1.13
RTN3-202ENST00000339997 OR2T27Q8NH04 317 aa8□□□□□ -1.13
RTN3-202ENST00000339997 FGF13Q92913 245 aa8□□□□□ -1.13
RTN3-202ENST00000339997 BSCL2Q96G97 398 aaPredicted RBP8□□□□□ -1.13
RTN3-202ENST00000339997 SORCS2Q96PQ0 1159 aa8□□□□□ -1.13
RTN3-202ENST00000339997 ARPC5LQ9BPX5 153 aa8□□□□□ -1.13
RTN3-202ENST00000339997 MRI1Q9BV20 369 aa8□□□□□ -1.13
RTN3-202ENST00000339997 PAPOLGQ9BWT3 736 aaKnown RBP8□□□□□ -1.13
RTN3-202ENST00000339997 VN1R3Q9BXE9 311 aa8□□□□□ -1.13
RTN3-202ENST00000339997 SLIRPQ9GZT3 109 aaKnown RBP8□□□□□ -1.13
RTN3-202ENST00000339997 DCTN6O00399 190 aa8□□□□□ -1.13
RTN3-202ENST00000339997 ADAMTS4O75173 837 aa8□□□□□ -1.13
RTN3-202ENST00000339997 PAPLNO95428 1278 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms