RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CRMP1Q14194 572 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 BTLAQ7Z6A9 289 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 SPNS2Q8IVW8 549 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 ST7LQ8TDW4 575 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 MIB2Q96AX9 1013 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 C1QTNF6Q9BXI9 259 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 CHRNA10Q9GZZ6 450 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 SLC22A4Q9H015 551 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 GPATCH2Q9NW75 528 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 OR14J1Q9UGF5 321 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 NTNG1Q9Y2I2 539 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 KCNIP3Q9Y2W7 256 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 C5orf51A6NDU8 294 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 GPRIN2O60269 458 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 CT62P0C5K7 136 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 FUT7Q11130 342 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 RGS7BPQ6MZT1 257 aaPredicted RBP9.21□□□□□ -0.94
USP54-201ENST00000339859 C1orf87Q8N0U7 546 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 OR10D3Q8NH80 312 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 HPS1Q92902 700 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 NRTNQ99748 197 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 FOXJ2Q9P0K8 574 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 EXTL2Q9UBQ6 330 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 XRCC2O43543 280 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 MPIG6BO95866 241 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 GTF2F2P13984 249 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 MAGEA5P43359 124 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 ADARB1P78563 741 aaKnown RBP9.2□□□□□ -0.94
USP54-201ENST00000339859 DUSP2Q05923 314 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 ZNF404Q494X3 552 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 TMPRSS7Q7RTY8 843 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 Q96M85 177 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 UBQLN3Q9H347 655 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 ENAMQ9NRM1 1142 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 EXO1Q9UQ84 846 aaKnown RBP9.2□□□□□ -0.94
USP54-201ENST00000339859 ZNF175Q9Y473 711 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 A0A0X1KG70 313 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 PRSS37A4D1T9 235 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 ZNF17P17021 662 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 GNRHRP30968 328 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 SNRPD2P62316 118 aaKnown RBP9.2□□□□□ -0.94
USP54-201ENST00000339859 KIAA0040Q15053 153 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 ZNF718Q3SXZ3 478 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 UBE3DQ7Z6J8 389 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 OR6V1Q8N148 313 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 SLC30A2Q9BRI3 323 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 CENPOQ9BU64 300 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 PTTG2Q9NZH5 202 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 ARRDC5A6NEK1 342 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 M0R129 80 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 BMP5P22003 454 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 ADPRMQ3LIE5 342 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 C1orf185Q5T7R7 199 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 KIRREL2Q6UWL6 708 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 DCDC5Q6ZRR9 648 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 SSX8Q7RTT4 187 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 PSMF1Q92530 271 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 A0A087WUJ7 227 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 A0A096LPE4 126 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 A0A1W2PPZ6 126 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 C5orf49A4QMS7 147 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 ARSBP15848 533 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 CHRNB4P30926 498 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 SQSTM1Q13501 440 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 CDNFQ49AH0 187 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 OR4F15Q8NGB8 312 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 DNAJB12Q9NXW2 375 aaKnown RBP9.2□□□□□ -0.94
USP54-201ENST00000339859 UBAP1Q9NZ09 502 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 GHRLQ9UBU3 117 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 ZNF225Q9UK10 706 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 OR52A1Q9UKL2 312 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 KCNE3Q9Y6H6 103 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 ZNF254O75437 659 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 MTCP1P56278 107 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 SLC37A1P57057 533 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 PLEKHN1Q494U1 663 aaPredicted RBP9.2□□□□□ -0.94
USP54-201ENST00000339859 DOK3Q7L591 496 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 DPY19L4Q7Z388 723 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 IL17RDQ8NFM7 739 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 SEMA6DQ8NFY4 1073 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 OR5H2Q8NGV7 314 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 ZNF721Q8TF20 911 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 SNRNP27Q8WVK2 155 aaKnown RBP9.2□□□□□ -0.94
USP54-201ENST00000339859 ZNF696Q9H7X3 374 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 EMC7Q9NPA0 242 aa9.2□□□□□ -0.94
USP54-201ENST00000339859 CCL21O00585 134 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 ALPLP05186 524 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 NFATC3Q12968 1075 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 RBM39Q14498 530 aaKnown RBP9.19□□□□□ -0.94
USP54-201ENST00000339859 HES5Q5TA89 166 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 GDPGP1Q6ZNW5 385 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 SERPINA12Q8IW75 414 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 SIMC1Q8NDZ2 872 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 NELFAQ9H3P2 528 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 FITM1A5D6W6 292 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 GDF9O60383 454 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 SRP9P49458 86 aaKnown RBP9.19□□□□□ -0.94
USP54-201ENST00000339859 ACSM3Q53FZ2 586 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 OR10A4Q9H209 315 aa9.19□□□□□ -0.94
USP54-201ENST00000339859 SMIM30A4D0T7 59 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms