RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 OR6N2Q8NGY6 317 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 ELP5Q8TE02 316 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 PIGMQ9H3S5 423 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 GAREM1Q9H706 876 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 MIOXQ9UGB7 285 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 RTTNQ86VV8 2226 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 A0A1W2PPE3 182 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 RNF222A6NCQ9 220 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 DCTN6O00399 190 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 LY86O95711 162 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 ELAVL1Q15717 326 aaKnown RBP13.07□□□□□ -0.32
SDC1-201ENST00000254351 OR52W1Q6IF63 320 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 C11orf87Q6NUJ2 197 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 ARHGAP11AQ6P4F7 1023 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 DPY19L4Q7Z388 723 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 FAM220AQ7Z4H9 259 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 ZNF227Q86WZ6 799 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 GABRG1Q8N1C3 465 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 FAM117AQ9C073 453 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 CHRDQ9H2X0 955 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 PRMT8Q9NR22 394 aaPredicted RBP13.07□□□□□ -0.32
SDC1-201ENST00000254351 WDR87Q6ZQQ6 2873 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 A0A1B0GV50 99 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 HLA-DQA2P01906 255 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 PNLIPRP2P54317 469 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 FAM53BQ14153 422 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 C2orf76Q3KRA6 126 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 Q499Y3 187 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 KRBOX4Q5JUW0 171 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 FAM109BQ6ICB4 259 aaPredicted RBP13.07□□□□□ -0.32
SDC1-201ENST00000254351 NAA40Q86UY6 237 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 NRROSQ86YC3 692 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 ETFBKMTQ8IXQ9 262 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 FAM46BQ96A09 425 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 ZBTB8AQ96BR9 441 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 ELF4Q99607 663 aaPredicted RBP13.07□□□□□ -0.32
SDC1-201ENST00000254351 SLC6A7Q99884 636 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 MENTQ9BUN1 341 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 ALG12Q9BV10 488 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 ZNF350Q9GZX5 532 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 RXFP3Q9NSD7 469 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 WDFY3Q8IZQ1 3526 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 CFAP54Q96N23 3096 aa13.07□□□□□ -0.32
SDC1-201ENST00000254351 POM121BA6NF01 834 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 TMEM235A6NFC5 223 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 BCL2L11O43521 198 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 XRCC3O43542 346 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 CSF1P09603 554 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 ADRB3P13945 408 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 NID1P14543 1247 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 CASRP41180 1078 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 SLC7A9P82251 487 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 PLAURQ03405 335 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 EIPR1Q53HC9 387 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 C9orf152Q5JTZ5 239 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 TMPRSS11FQ6ZWK6 438 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 ZNF619Q8N2I2 560 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 BHLHE23Q8NDY6 225 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 OR4K14Q8NGD5 310 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 OR52E1Q8NGJ3 308 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 CXorf40AQ8TE69 158 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 DCUN1D4Q92564 292 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 FAM83CQ9BQN1 747 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 STARD5Q9NSY2 213 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 OR2B8PP59922 312 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 AIMP2Q13155 320 aaKnown RBP13.06□□□□□ -0.32
SDC1-201ENST00000254351 NKAPLQ5M9Q1 402 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 ZNF600Q6ZNG1 722 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 TCEAL8Q8IYN2 117 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 BPIFB2Q8N4F0 458 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 SMARCD2Q92925 531 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 CMBLQ96DG6 245 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 CNTNAP3BQ96NU0 1288 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 TMEM106CQ9BVX2 250 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 WDR76Q9H967 626 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 MBNL1Q9NR56 388 aaKnown RBP13.06□□□□□ -0.32
SDC1-201ENST00000254351 GHRLQ9UBU3 117 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 SLC22A13Q9Y226 551 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 A0A0D9SG52 128 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 PLGP00747 810 aaPredicted RBP13.06□□□□□ -0.32
SDC1-201ENST00000254351 HAAOP46952 286 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 GFOD2Q3B7J2 385 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 CDNFQ49AH0 187 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 ATPAF1Q5TC12 328 aaPredicted RBP13.06□□□□□ -0.32
SDC1-201ENST00000254351 GVQW1Q8N7I0 195 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 ACBD4Q8NC06 268 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 NR4A3Q92570 626 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 TCEAL3Q969E4 200 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 WDR77Q9BQA1 342 aaPredicted RBP13.06□□□□□ -0.32
SDC1-201ENST00000254351 ZFP57Q9NU63 452 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 ADAM29Q9UKF5 820 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 TBX21Q9UL17 535 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 TNFSF18Q9UNG2 199 aa13.06□□□□□ -0.32
SDC1-201ENST00000254351 PRRT4C9JH25 899 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 NDUFB2O95178 105 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 PI3P19957 117 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 CDKN2AP42771 156 aaKnown RBP13.05□□□□□ -0.32
SDC1-201ENST00000254351 POU4F2Q12837 409 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 DUSP8Q13202 625 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 PEA15Q15121 130 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms