RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 SPTBP11277 2137 aa16.96■□□□□ 0.31
CPSF3-201ENST00000238112 A8MUA0 341 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 PYCARD-AS1I3L0S3 204 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 XKRYO14609 159 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 HLA-DQA2P01906 255 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 CD1CP29017 333 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 BIKQ13323 160 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 POMZP3Q6PJE2 187 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 FAM198BQ6UWH4 519 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 NUP54Q7Z3B4 507 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 PTPMT1Q8WUK0 201 aaPredicted RBP16.96■□□□□ 0.3
CPSF3-201ENST00000238112 THRSPQ92748 146 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 MSANTD3Q96H12 275 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 CCDC120Q96HB5 630 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 C4orf45Q96LM5 186 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 SLC46A1Q96NT5 459 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 GINS4Q9BRT9 223 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 SEMA4CQ9C0C4 833 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 OR8D2Q9GZM6 311 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 ZNF224Q9NZL3 707 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 CD207Q9UJ71 328 aa16.96■□□□□ 0.3
CPSF3-201ENST00000238112 EML5Q05BV3 1969 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 MPDZO75970 2070 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 GGT3PA6NGU5 568 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 CHURC1-FNTBB4DL54 471 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 OR2A4O95047 310 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 ZNF250P15622 560 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 CXCL2P19875 107 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 NFYAP23511 347 aaPredicted RBP16.95■□□□□ 0.3
CPSF3-201ENST00000238112 CXCR1P25024 350 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 RORAP35398 523 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 SLC6A8P48029 635 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 FNTBP49356 437 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 ANKRD16Q6P6B7 361 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 LRRC69Q6ZNQ3 347 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 CHMP1BQ7LBR1 199 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 OR51D1Q8NGF3 324 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 OR4C16Q8NGL9 310 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 KLHDC7BQ96G42 594 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 SFXN2Q96NB2 322 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 OR2A7Q96R45 310 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 C8orf33Q9H7E9 229 aaPredicted RBP16.95■□□□□ 0.3
CPSF3-201ENST00000238112 C12orf10Q9HB07 376 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 KCNN3Q9UGI6 736 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 KCNG2Q9UJ96 466 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 ING1Q9UK53 422 aaPredicted RBP16.95■□□□□ 0.3
CPSF3-201ENST00000238112 A0A0C4DFX4 3053 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 TUBAL3A6NHL2 446 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 H0YIG0 161 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 HCRTR2O43614 444 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 CENPAP49450 140 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 WDR38Q5JTN6 314 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 OR5M10Q6IEU7 315 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 C3P1Q6ZMU1 363 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 PRR22Q8IZ63 422 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 OR52B4Q8NGK2 314 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 OTOSQ8NHW6 89 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 MCHR2Q969V1 340 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 DNAJA3Q96EY1 480 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 ZNF285Q96NJ3 590 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 GAL3ST4Q96RP7 486 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 KLHDC3Q9BQ90 382 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 LAT2Q9GZY6 243 aa16.95■□□□□ 0.3
CPSF3-201ENST00000238112 TP53BP1Q12888 1972 aaPredicted RBP16.94■□□□□ 0.3
CPSF3-201ENST00000238112 OR2M5A3KFT3 312 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 FRG2CA6NGY1 282 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 C11orf98E9PRG8 122 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 CTAG2O75638 210 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 RLN1P04808 185 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 CCKBRP32239 447 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 KIR3DL2P43630 455 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 DMWDQ09019 674 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.94■□□□□ 0.3
CPSF3-201ENST00000238112 AMELYQ99218 206 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 SLC38A3Q99624 504 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 TMPRSS13Q9BYE2 586 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 ADAM19Q9H013 955 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 GPR27Q9NS67 375 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 SPEF1Q9Y4P9 236 aa16.94■□□□□ 0.3
CPSF3-201ENST00000238112 MYO9BQ13459 2157 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 C10orf142B7Z368 130 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 TMEM150CB9EJG8 249 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 ICOSLGO75144 302 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 CSRP1P21291 193 aaKnown RBP16.93■□□□□ 0.3
CPSF3-201ENST00000238112 POU3F4P49335 361 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 DLX5P56178 289 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 ZNF117Q03924 483 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 WDR45BQ5MNZ6 344 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 NHLRC1Q6VVB1 395 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 TMEM151BQ8IW70 566 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 METTL21AQ8WXB1 218 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 ELOVL3Q9HB03 270 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 RDH8Q9NYR8 311 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 KIF25Q9UIL4 384 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 GTF2A1LQ9UNN4 478 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 CDC40O60508 579 aaKnown RBP eCLIP16.93■□□□□ 0.3
CPSF3-201ENST00000238112 SCO1O75880 301 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 NUDT14O95848 222 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 VSIG10L2P0DP72 767 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 MAOBP27338 520 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms