RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 OMGP23515 440 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 APOBEC1P41238 236 aaKnown RBP12.48□□□□□ -0.41
SF3A1-201ENST00000215793 HNF4GQ14541 408 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 DUSP5Q16690 384 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 LRRC26Q2I0M4 334 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 OR10K1Q8NGX5 313 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 KIRREL1Q96J84 757 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 GAREM1Q9H706 876 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 hCG_1809904A0A1W2PP81 198 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 A0A1W2PPE2 198 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 A0A1W2PR64 198 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 A0A1W2PRV1 198 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 LRP5LA4QPB2 252 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 POM121CA8CG34 1229 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 SBK2P0C263 348 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 CD1CP29017 333 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 CYB561P49447 251 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 RPL27P61353 136 aaKnown RBP12.48□□□□□ -0.41
SF3A1-201ENST00000215793 HTR4Q13639 388 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 IAH1Q2TAA2 248 aaPredicted RBP12.48□□□□□ -0.41
SF3A1-201ENST00000215793 SHEQ5VZ18 495 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 FCRL6Q6DN72 434 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 MARCH3Q86UD3 253 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 PRSS35Q8N3Z0 413 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 NANOGP1Q8N7R0 232 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 RASD2Q96D21 266 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 TEAD3Q99594 435 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 ZDHHC5Q9C0B5 715 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 HRASLSQ9HDD0 168 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 KCNIP2Q9NS61 270 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 GPATCH2Q9NW75 528 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF225Q9UK10 706 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 PRICKLE3O43900 615 aaPredicted RBP12.47□□□□□ -0.41
SF3A1-201ENST00000215793 RGS11O94810 467 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 TPMTP51580 245 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 ISL1P61371 349 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 PAN3Q58A45 887 aaKnown RBP12.47□□□□□ -0.41
SF3A1-201ENST00000215793 TRIM61Q5EBN2 209 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 SAXO2Q658L1 398 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 DCXRQ7Z4W1 244 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 RPS19BP1Q86WX3 136 aaKnown RBP12.47□□□□□ -0.41
SF3A1-201ENST00000215793 C4BP0C0L5 1744 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 MYH9P35579 1960 aaKnown RBP12.47□□□□□ -0.41
SF3A1-201ENST00000215793 AGAP14A8MT82 685 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 G3V3Y1 287 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF749O43361 778 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 NSA2O95478 260 aaKnown RBP12.47□□□□□ -0.41
SF3A1-201ENST00000215793 FCN2Q15485 313 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF77Q15935 545 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 SSX2Q16385 188 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 SYT14P1Q58G82 188 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 HIST2H3PS2Q5TEC6 136 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 FAM26EQ8N5C1 309 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 OR5H6Q8NGV6 325 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 OR4A16Q8NH70 328 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 TERB2Q8NHR7 220 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 FAM213BQ8TBF2 198 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 LRFN5Q96NI6 719 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 ZIC5Q96T25 663 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 CSF3RQ99062 836 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 SLC39A9Q9NUM3 307 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 GNG13Q9P2W3 67 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 PPT2Q9UMR5 302 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 DOT1LQ8TEK3 1739 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 TSTD3H0UI37 97 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 RAF1P04049 648 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 S100A11P31949 105 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 SERPINF1P36955 418 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 P2RX1P51575 399 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 LTC4SQ16873 150 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 CST9Q5W186 159 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 VHLLQ6RSH7 139 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 LGI3Q8N145 548 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 ASB16Q96NS5 453 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 DCLRE1CQ96SD1 692 aaKnown RBP12.47□□□□□ -0.41
SF3A1-201ENST00000215793 PBX4Q9BYU1 374 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 OR6C65A6NJZ3 312 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF732B4DXR9 585 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 CLDN1O95832 211 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 ACHEP22303 614 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 RAB11AP62491 216 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 LINC00696Q6ZRV3 163 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 OVCH1Q7RTY7 1134 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 BCDIN3DQ7Z5W3 292 aaKnown RBP12.47□□□□□ -0.41
SF3A1-201ENST00000215793 NAXDQ8IW45 347 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 SLC30A7Q8NEW0 376 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 SDF2Q99470 211 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 ELF4Q99607 663 aaPredicted RBP12.47□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF576Q9H609 170 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 CLEC2DQ9UHP7 191 aa12.47□□□□□ -0.41
SF3A1-201ENST00000215793 TMEM200CA6NKL6 621 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 SLC6A12P48065 614 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 RAB5CP51148 216 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 SLC35A2P78381 396 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 ARHGAP11BQ3KRB8 267 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 NKAIN1Q4KMZ8 207 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 PYCR3Q53H96 274 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 GLIPR1L1Q6UWM5 242 aa12.46□□□□□ -0.41
SF3A1-201ENST00000215793 MAML2Q8IZL2 1156 aaPredicted RBP12.46□□□□□ -0.41
SF3A1-201ENST00000215793 LINC01599Q8WXQ3 324 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms