RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TNFP01375 233 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 UBBP0CG47 229 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 UBCP0CG48 685 aaKnown RBP3.64□□□□□ -1.83
SCN1A-214ENST00000637038 RRASP10301 218 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 ZP3P21754 424 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 S100A11P31949 105 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 GJA4P35212 333 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 THBS2P35442 1172 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 MAP3K8P41279 467 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 SLC6A8P48029 635 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 VEGFCP49767 419 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 RPS27AP62979 156 aaKnown RBP3.64□□□□□ -1.83
SCN1A-214ENST00000637038 UBA52P62987 128 aaKnown RBP3.64□□□□□ -1.83
SCN1A-214ENST00000637038 ALKBH1Q13686 389 aaKnown RBP3.64□□□□□ -1.83
SCN1A-214ENST00000637038 MPPED2Q15777 294 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 FAM189A2Q15884 450 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 HLA-DQA1Q5Y7H0 255 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 B3GNTL1Q67FW5 361 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-214ENST00000637038 WBP2NLQ6ICG8 309 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 OR7E24Q6IFN5 339 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 LPCAT3Q6P1A2 487 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 FAM122CQ6P4D5 195 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 LEG1Q6P5S2 330 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 SEZ6L2Q6UXD5 910 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 C1orf122Q6ZSJ8 110 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 RNF44Q7L0R7 432 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 FCRLAQ7L513 359 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-214ENST00000637038 OR52R1Q8NGF1 315 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 RIT1Q92963 219 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 SGK3Q96BR1 496 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 HAVCR1Q96D42 359 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 ZG16BQ96DA0 208 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 C10orf90Q96M02 699 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 SLCO5A1Q9H2Y9 848 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 EXO5Q9H790 373 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 BEX1Q9HBH7 125 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 SLC17A5Q9NRA2 495 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 POT1Q9NUX5 634 aa3.64□□□□□ -1.83
SCN1A-214ENST00000637038 EXPH5Q8NEV8 1989 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 KIR2DS5A0A0G2JLQ3 304 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 A0A0G2JNG1 304 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 A0A1B0GVC2 190 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 A0A1W2PPK0 400 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 ZC3H12DA2A288 527 aaKnown RBP3.63□□□□□ -1.83
SCN1A-214ENST00000637038 A6NIN4 97 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 DISC1C4P0D8 188 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 KIR2DS3K7RE56 304 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 PRICKLE3O43900 615 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-214ENST00000637038 PTP4A3O75365 173 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 NDUFB6O95139 128 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 ZGLP1P0C6A0 271 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 GTF2F2P13984 249 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 RPS2P15880 293 aaKnown RBP3.63□□□□□ -1.83
SCN1A-214ENST00000637038 SPI1P17947 270 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 PTNP21246 168 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 NTSR1P30989 418 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 PRSS3P35030 304 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 LSM11P83369 360 aaKnown RBP eCLIP3.63□□□□□ -1.83
SCN1A-214ENST00000637038 KLRB1Q12918 225 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 SERTAD2Q14140 314 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 INSL4Q14641 139 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 KIR2DS5Q14953 304 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 SLC36A2Q495M3 483 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 PEAR1Q5VY43 1037 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-214ENST00000637038 FCRL6Q6DN72 434 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 VASNQ6EMK4 673 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 KCTD18Q6PI47 426 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-214ENST00000637038 DNM1P34Q6PK57 102 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 VN1R4Q7Z5H5 301 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 ABI3BPQ7Z7G0 1075 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF595Q8IYB9 648 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 OR52I2Q8NH67 350 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF563Q8TA94 476 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 PELI1Q96FA3 418 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 MAP6Q96JE9 813 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 PGLYRP3Q96LB9 341 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 PDCD10Q9BUL8 212 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 ALG12Q9BV10 488 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 FOXQ1Q9C009 403 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 SEMA4CQ9C0C4 833 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 AICDAQ9GZX7 198 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 ARL6Q9H0F7 186 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 ZCCHC4Q9H5U6 513 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 ZFP64Q9NPA5 681 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 PRTFDC1Q9NRG1 225 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 MED9Q9NWA0 146 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 GTF2A1LQ9UNN4 478 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 PCDHGA9Q9Y5G4 932 aaKnown RBP3.63□□□□□ -1.83
SCN1A-214ENST00000637038 NPTNQ9Y639 398 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 FREM2Q5SZK8 3169 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 A0A0D9SG52 128 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 A0A0G2JK05 382 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 A0A1B0GVT2 93 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 ANKRD20A5PA0PJZ0 165 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 SERINC4A6NH21 518 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF860A6NHJ4 632 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 HMSDA8MTL9 139 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 H0YGG7 62 aa3.63□□□□□ -1.83
SCN1A-214ENST00000637038 SULT1C2O00338 296 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms