RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 DPY19L2P2Q6ZN68 376 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 USP53Q70EK8 1073 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 CDRT4Q8N9R6 151 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 ZNF511Q8NB15 262 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 OR1J2Q8NGS2 313 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 OR10AC1Q8NH08 325 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 TRIM43Q96BQ3 446 aaPredicted RBP12.84□□□□□ -0.35
LDB3-209ENST00000623056 ALG12Q9BV10 488 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 TMEM74BQ9NUR3 256 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 FBXO4Q9UKT5 387 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 KIAA0100Q14667 2235 aaKnown RBP12.84□□□□□ -0.35
LDB3-209ENST00000623056 TMEM72A0PK05 275 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 IGLON5A6NGN9 336 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 C4orf47A7E2U8 309 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 WNT11O96014 354 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 TACSTD2P09758 323 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 DDX6P26196 483 aaKnown RBP eCLIP12.84□□□□□ -0.35
LDB3-209ENST00000623056 CMPK1P30085 196 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 PSMD4P55036 377 aaKnown RBP12.84□□□□□ -0.35
LDB3-209ENST00000623056 DCDP81605 110 aaKnown RBP12.84□□□□□ -0.35
LDB3-209ENST00000623056 SRSF4Q08170 494 aaKnown RBP12.84□□□□□ -0.35
LDB3-209ENST00000623056 RUNX2Q13950 521 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 ELAVL3Q14576 367 aaKnown RBP12.84□□□□□ -0.35
LDB3-209ENST00000623056 SPAG16Q8N0X2 631 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 STACQ99469 402 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 TRIM2Q9C040 744 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 CDV3Q9UKY7 258 aaKnown RBP12.84□□□□□ -0.35
LDB3-209ENST00000623056 EML5Q05BV3 1969 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 SPTBP11277 2137 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 TRBV5-7A0A0A0MS05 114 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 EDDM13A0A1B0GTR0 161 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 LRRC72A6NJI9 287 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 P2RY2P41231 377 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 KCNJ3P48549 501 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 POU3F4P49335 361 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 KCNAB1Q14722 419 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 EXOSC7Q15024 291 aaKnown RBP12.83□□□□□ -0.36
LDB3-209ENST00000623056 ENPP7Q6UWV6 458 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 LINC00114Q6XXX2 140 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 ACOT7LQ6ZUV0 252 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 LINC00469Q8N7U9 141 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 ZNF417Q8TAU3 575 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 ZCCHC10Q8TBK6 192 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 WFIKKN2Q8TEU8 576 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 TMEM106AQ96A25 262 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 CMSS1Q9BQ75 279 aaKnown RBP12.83□□□□□ -0.36
LDB3-209ENST00000623056 PDCD10Q9BUL8 212 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 GAREM1Q9H706 876 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 DNAJB12Q9NXW2 375 aaKnown RBP12.83□□□□□ -0.36
LDB3-209ENST00000623056 COMMD9Q9P000 198 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 EPHA6Q9UF33 1036 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 CCSO14618 274 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 RAB3DO95716 219 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 SPP1P10451 314 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 DHRS2Q13268 280 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 DEFB134Q4QY38 66 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 RAB12Q6IQ22 244 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 OR51A4Q8NGJ6 313 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 GPX8Q8TED1 209 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 C2CD4CQ8TF44 421 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 GLYATL2Q8WU03 294 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 SEC22AQ96IW7 307 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 ZNF629Q9UEG4 869 aaPredicted RBP12.83□□□□□ -0.36
LDB3-209ENST00000623056 MKL2Q9ULH7 1088 aa12.83□□□□□ -0.36
LDB3-209ENST00000623056 F5H0A9 414 aaPredicted RBP12.82□□□□□ -0.36
LDB3-209ENST00000623056 M0QYG6 137 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 ARPC3O15145 178 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 SRPX2O60687 465 aaPredicted RBP12.82□□□□□ -0.36
LDB3-209ENST00000623056 ABHD16AO95870 558 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 CD34P28906 385 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 CASRP41180 1078 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 ATP1B3P54709 279 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 TAS2R19P59542 299 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 ACTBP60709 375 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 ACTG1P63261 375 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 BLOC1S1P78537 153 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 NR0B2Q15466 257 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 C10orf91Q5T1B1 145 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 ATPAF1Q5TC12 328 aaPredicted RBP12.82□□□□□ -0.36
LDB3-209ENST00000623056 C1orf53Q5VUE5 145 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 LPCAT3Q6P1A2 487 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 LEG1Q6P5S2 330 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 KIRREL2Q6UWL6 708 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 SLC16A9Q7RTY1 509 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 ZNF595Q8IYB9 648 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 SHISA5Q8N114 240 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 THAP6Q8TBB0 222 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 PPP1R1CQ8WVI7 109 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 RBM18Q96H35 190 aaKnown RBP12.82□□□□□ -0.36
LDB3-209ENST00000623056 ADAD1Q96M93 576 aaKnown RBP12.82□□□□□ -0.36
LDB3-209ENST00000623056 TSSK2Q96PF2 358 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 MNTQ99583 582 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 POTEKPQ9BYX7 375 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 TINAGL1Q9GZM7 467 aaPredicted RBP12.82□□□□□ -0.36
LDB3-209ENST00000623056 ZBP1Q9H171 429 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 MKKSQ9NPJ1 570 aaPredicted RBP12.82□□□□□ -0.36
LDB3-209ENST00000623056 MBNL1Q9NR56 388 aaKnown RBP12.82□□□□□ -0.36
LDB3-209ENST00000623056 LHX6Q9UPM6 363 aa12.82□□□□□ -0.36
LDB3-209ENST00000623056 YBX2Q9Y2T7 364 aaKnown RBP12.82□□□□□ -0.36
LDB3-209ENST00000623056 CARHSP1Q9Y2V2 147 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms