RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ICAM5Q9UMF0 924 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 WNT6Q9Y6F9 365 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 C2orf74A8MZ97 194 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 F8VVB4 439 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 F8VWA3 439 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 SULT2B1O00204 365 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 TO15178 435 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 NDUFS6O75380 124 aaKnown RBP9.87□□□□□ -0.83
UPF3A-212ENST00000619079 CLEC3AO75596 197 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PPP1R3DO95685 299 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 MT-ND4LP03901 98 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 HLA-GP17693 338 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 FUT1P19526 365 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PRSS3P35030 304 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PMELP40967 661 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF136P52737 540 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PDX1P52945 283 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PON3Q15166 354 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF77Q15935 545 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PNLIPRP3Q17RR3 467 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PLEKHN1Q494U1 663 aaPredicted RBP9.87□□□□□ -0.83
UPF3A-212ENST00000619079 Q499Y3 187 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 SLC6A19Q695T7 634 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF836Q6ZNA1 936 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 FRRS1Q6ZNA5 592 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 DCUN1D3Q8IWE4 304 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 CCDC116Q8IYX3 515 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 CLEC1AQ8NC01 280 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 SDR9C7Q8NEX9 313 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 OR5AP2Q8NGF4 316 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PPP1R1CQ8WVI7 109 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 EDARADDQ8WWZ3 215 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 ZMYND19Q96E35 227 aaPredicted RBP9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PIK3IP1Q96FE7 263 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 NECAB3Q96P71 396 aaPredicted RBP9.87□□□□□ -0.83
UPF3A-212ENST00000619079 IL17FQ96PD4 163 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 NRIP2Q9BQI9 281 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PLA2G2FQ9BZM2 168 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 ZDHHC5Q9C0B5 715 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 TMEM27Q9HBJ8 222 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 OBP2AQ9NY56 170 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 DHCR7Q9UBM7 475 aaKnown RBP9.87□□□□□ -0.83
UPF3A-212ENST00000619079 FBXL4Q9UKA2 621 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PCOLCE2Q9UKZ9 415 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 ASF1AQ9Y294 204 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 WDR45Q9Y484 360 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 SLC22A7Q9Y694 548 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 ST8SIA5O15466 376 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 FCMRO60667 390 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 ICOSLGO75144 302 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 DNAJB6O75190 326 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 POP7O75817 140 aaKnown RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 ANXA2P07355 339 aaKnown RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 AGAP20933 346 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 PTNP21246 168 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 AIMP2Q13155 320 aaKnown RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 AMZ1Q400G9 498 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 LIPNQ5VXI9 398 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 TMEM205Q6UW68 189 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 TMPRSS12Q86WS5 348 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 BAP18Q8IXM2 172 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 NRSN1Q8IZ57 195 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 CHST14Q8NCH0 376 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 CNRIP1Q96F85 164 aaPredicted RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 RBM18Q96H35 190 aaKnown RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 LRRC3BQ96PB8 259 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 CHST6Q9GZX3 395 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 STEAP1Q9UHE8 339 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF230Q9UIE0 474 aaPredicted RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 SERTAD3Q9UJW9 196 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 CLEC4EQ9ULY5 219 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 NOP16Q9Y3C1 178 aaKnown RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 TSPAN11A1L157 253 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF705EA8MWA4 302 aaPredicted RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 MAGEB4O15481 346 aaPredicted RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 P2RX6O15547 441 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 OR1F1O43749 312 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 F12P00748 615 aaPredicted RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 CD3DP04234 171 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 CBR1P16152 277 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 NFYBP25208 207 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 PSMB10P40306 273 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 EIF2S3P41091 472 aaKnown RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 MC3RP41968 323 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 CSNK1EP49674 416 aaKnown RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 FABP9Q0Z7S8 132 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 DUSP8Q13202 625 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 PRAMEF17Q5VTA0 474 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 Q6ZVU0 165 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 DPPA4Q7L190 304 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 TMED4Q7Z7H5 227 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 STX12Q86Y82 276 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 GABRG1Q8N1C3 465 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 OR4A4PQ8NGN8 299 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 TMPRSS5Q9H3S3 457 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 SYNPO2LQ9H987 977 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 SEC61A2Q9H9S3 476 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 MRPS30Q9NP92 439 aaKnown RBP9.86□□□□□ -0.83
UPF3A-212ENST00000619079 SLC17A5Q9NRA2 495 aa9.86□□□□□ -0.83
UPF3A-212ENST00000619079 DOCK8Q8NF50 2099 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms