RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CD5P06127 495 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 TMIGD3P0DMS9 266 aaPredicted RBP9.36□□□□□ -0.91
VPS39-214ENST00000614932 HKR1P10072 659 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 SLC25A4P12235 298 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 DAOP14920 347 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 DLSTP36957 453 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 NSG1P42857 185 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 PCBP2Q15366 365 aaKnown RBP eCLIP9.36□□□□□ -0.912e-6■■■■□ 23.1
VPS39-214ENST00000614932 SLC25A35Q3KQZ1 300 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 AKR1C8PQ5T2L2 129 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 ADNP2Q6IQ32 1131 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 PSRC1Q6PGN9 363 aaPredicted RBP9.36□□□□□ -0.91
VPS39-214ENST00000614932 ULK3Q6PHR2 472 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 DHRS11Q6UWP2 260 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 HEPN1Q6WQI6 88 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 SMIM15Q7Z3B0 74 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 GID4Q8IVV7 300 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 RGL4Q8IZJ4 473 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 BEST3Q8N1M1 668 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 OR5D16Q8NGK9 328 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 AKR1E2Q96JD6 320 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 TSSK3Q96PN8 268 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 RNF222A6NCQ9 220 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 PRODHO43272 600 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 RNF13O43567 381 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 CA11O75493 328 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 STK16O75716 305 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 FGBP02675 491 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 ARG1P05089 322 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 CTSLP07711 333 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 TBC1D3HP0C7X1 549 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 EPB42P16452 691 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 NME2P22392 152 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 HTR2CP28335 458 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 KIR3DL1P43629 444 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 MTNR1AP48039 350 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 SPINT3P49223 89 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 JOSD1Q15040 202 aaPredicted RBP9.35□□□□□ -0.91
VPS39-214ENST00000614932 CCSMST1Q4G0I0 132 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 MED27Q6P2C8 311 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 SMARCD3Q6STE5 483 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 TAF8Q7Z7C8 310 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 IZUMO1Q8IYV9 350 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 MMP21Q8N119 569 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 JAGN1Q8N5M9 183 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 IQCF1Q8N6M8 205 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 ZNF610Q8N9Z0 462 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 NAXEQ8NCW5 288 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 OR52I2Q8NH67 350 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 GEMIN6Q8WXD5 167 aaKnown RBP9.35□□□□□ -0.91
VPS39-214ENST00000614932 GALNT14Q96FL9 552 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 PACRGQ96M98 296 aaPredicted RBP9.35□□□□□ -0.91
VPS39-214ENST00000614932 OR2M4Q96R27 311 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 EBPLQ9BY08 206 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 HRH4Q9H3N8 390 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 LMAN1LQ9HAT1 526 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 ZDHHC3Q9NYG2 299 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 RHCGQ9UBD6 479 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 FBXO7Q9Y3I1 522 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 TMED3Q9Y3Q3 217 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 ENPP4Q9Y6X5 453 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 TRBV5-4A0A0C4DH59 114 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 A0A1W2PN81 502 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 OR5H14A6NHG9 310 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 C9J4A7 227 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 GABARAPH6UMI1 98 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 TXNDC12O95881 172 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 PDYNP01213 254 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 CD8AP01732 235 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 CD46P15529 392 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 CEBPBP17676 345 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 BMI1P35226 326 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 CHRNA7P36544 502 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 LSM11P83369 360 aaKnown RBP eCLIP9.35□□□□□ -0.917e-7■■□□□ 12.4
VPS39-214ENST00000614932 TLE4Q04727 773 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 ZNF750Q32MQ0 723 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 CHRFAM7AQ494W8 412 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 GFI1BQ5VTD9 330 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 FAM199XQ6PEV8 388 aaPredicted RBP9.35□□□□□ -0.91
VPS39-214ENST00000614932 UNQ6126/PRO20091Q6UXV3 157 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 UBE3DQ7Z6J8 389 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 EID2Q8N6I1 236 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 CELF5Q8N6W0 485 aaKnown RBP9.35□□□□□ -0.91
VPS39-214ENST00000614932 MRPL43Q8N983 215 aaKnown RBP9.35□□□□□ -0.91
VPS39-214ENST00000614932 M1APQ8TC57 530 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 GPR148Q8TDV2 347 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 LMLNQ96KR4 655 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 ACPTQ9BZG2 426 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 POLR2J3Q9H1A7 115 aaKnown RBP9.35□□□□□ -0.91
VPS39-214ENST00000614932 CHST8Q9H2A9 424 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 SEPSECSQ9HD40 501 aaKnown RBP9.35□□□□□ -0.91
VPS39-214ENST00000614932 ABRACLQ9P1F3 81 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 RPH3ALQ9UNE2 315 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 HS3ST2Q9Y278 367 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 NOTCH4Q99466 2003 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 OBSL1O75147 1896 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 VCANP13611 3396 aa9.35□□□□□ -0.91
VPS39-214ENST00000614932 MYO15AQ9UKN7 3530 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 TCRBV21S2A2A0A5A6 115 aa9.34□□□□□ -0.91
VPS39-214ENST00000614932 ANKRD20A5PA0PJZ0 165 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms