RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PLPP7Q8NBV4 271 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 ELOA3Q8NG57 546 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 OR14A16Q8NHC5 309 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 CPNE2Q96FN4 548 aaPredicted RBP16.71■□□□□ 0.26
UPF1-210ENST00000600689 ELF4Q99607 663 aaPredicted RBP16.71■□□□□ 0.26
UPF1-210ENST00000600689 HAO2Q9NYQ3 351 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 ACTR10Q9NZ32 417 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 DCTN6O00399 190 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 NDUFA2O43678 99 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 OR7A5Q15622 319 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 ARHGAP40Q5TG30 622 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 NPEPL1Q8NDH3 523 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 USB1Q9BQ65 265 aaKnown RBP16.7■□□□□ 0.26
UPF1-210ENST00000600689 TINAGL1Q9GZM7 467 aaPredicted RBP16.7■□□□□ 0.26
UPF1-210ENST00000600689 F5P12259 2224 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 TRAV14DV4A0A0A6YYC5 116 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 HMSDA8MTL9 139 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 B3GALT2O43825 422 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 CTSVO60911 334 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 AGR2O95994 175 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 RAB40ALP0C0E4 278 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 ZNF28P17035 718 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 CDKN2AP42771 156 aaKnown RBP16.7■□□□□ 0.26
UPF1-210ENST00000600689 POU3F4P49335 361 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 CCL4L1Q8NHW4 92 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 CASTOR1Q8WTX7 329 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 RAB40AQ8WXH6 277 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 PITHD1Q9GZP4 211 aaPredicted RBP16.7■□□□□ 0.26
UPF1-210ENST00000600689 SLC6A5Q9Y345 797 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 DENND4AQ7Z401 1863 aa16.7■□□□□ 0.26
UPF1-210ENST00000600689 CNTRLQ7Z7A1 2325 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 KANTRA0A1W2PQU2 76 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 EPOPA6NHQ4 379 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 AMY2AP04746 511 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 POU2F2P09086 479 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 MPGP29372 298 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 CCKBRP32239 447 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 Q499Y3 187 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 UNQ9370/PRO34162Q6UXP9 181 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 DPY19L4Q7Z388 723 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 KRT77Q7Z794 578 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 CD163Q86VB7 1156 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 POMGNT2Q8NAT1 580 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 OR52R1Q8NGF1 315 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 OR1S2Q8NGQ3 325 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 OR1J2Q8NGS2 313 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 NSMAFQ92636 917 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 FGF14Q92915 247 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 VRK1Q99986 396 aaPredicted RBP16.69■□□□□ 0.26
UPF1-210ENST00000600689 HRKO00198 91 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 KCNJ13O60928 360 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 RAB12Q6IQ22 244 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 SLC35D2Q76EJ3 337 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 BIVMQ86UB2 503 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 NAXDQ8IW45 347 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 SLC35F3Q8IY50 421 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 SLC2A12Q8TD20 617 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 APMAPQ9HDC9 416 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 MKKSQ9NPJ1 570 aaPredicted RBP16.69■□□□□ 0.26
UPF1-210ENST00000600689 DAPP1Q9UN19 280 aa16.69■□□□□ 0.26
UPF1-210ENST00000600689 H7C417 338 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 MTRF1O75570 445 aaKnown RBP16.68■□□□□ 0.26
UPF1-210ENST00000600689 GLAP06280 429 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 PARM1Q6UWI2 310 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 RHOUQ7L0Q8 258 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 ZNF227Q86WZ6 799 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 C12orf45Q8N5I9 185 aaPredicted RBP16.68■□□□□ 0.26
UPF1-210ENST00000600689 MTFP1Q9UDX5 166 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 C19orf53Q9UNZ5 99 aaPredicted RBP16.68■□□□□ 0.26
UPF1-210ENST00000600689 F5H0A9 414 aaPredicted RBP16.68■□□□□ 0.26
UPF1-210ENST00000600689 GPRIN2O60269 458 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 OR10H2O60403 315 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 ALOX12BO75342 701 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 SLC25A12O75746 678 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 STEAP1BQ6NZ63 245 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 GAL3ST3Q96A11 431 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 RAB7BQ96AH8 199 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 GDE1Q9NZC3 331 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 MRM2Q9UI43 246 aaKnown RBP16.68■□□□□ 0.26
UPF1-210ENST00000600689 GGT3PA6NGU5 568 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 HLA-DQA2P01906 255 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 OR4E1P0C645 316 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 GDI1P31150 447 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 IL10RAQ13651 578 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 FBXO42Q6P3S6 717 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 OR2W3Q7Z3T1 314 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 JAZF1Q86VZ6 243 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 PUSL1Q8N0Z8 303 aaKnown RBP16.68■□□□□ 0.26
UPF1-210ENST00000600689 GALNT16Q8N428 558 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 WDR76Q9H967 626 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 STEAP1Q9UHE8 339 aa16.68■□□□□ 0.26
UPF1-210ENST00000600689 OR5H14A6NHG9 310 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 AKAIN1P0CW23 69 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 PRSS3P35030 304 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 MNDAP41218 407 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 ALKBH1Q13686 389 aaKnown RBP16.67■□□□□ 0.26
UPF1-210ENST00000600689 KCTD9Q7L273 389 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 CDRT4Q8N9R6 151 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 OR4S1Q8NGB4 309 aa16.67■□□□□ 0.26
UPF1-210ENST00000600689 OR6K3Q8NGY3 331 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms