RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 MELKQ14680 651 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 GSG1Q2KHT4 349 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 MMEL1Q495T6 779 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 REP15Q6BDI9 236 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 KRT80Q6KB66 452 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 SLC35D2Q76EJ3 337 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF627Q7L945 461 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 SPATA21Q7Z572 469 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 SVOPLQ8N434 492 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 NEU4Q8WWR8 484 aaPredicted RBP17.69■□□□□ 0.42
SHMT1-209ENST00000582653 MSI2Q96DH6 328 aaKnown RBP17.69■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF75AQ96N20 296 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 FOXB1Q99853 325 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 PCDHAC1Q9H158 963 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 MEPEQ9NQ76 525 aaPredicted RBP17.69■□□□□ 0.42
SHMT1-209ENST00000582653 SAR1AQ9NR31 198 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF224Q9NZL3 707 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 FBN3Q75N90 2809 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 IGHV4-61A0A0C4DH41 118 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 LOC100289279A0A1B0GTE1 492 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 SH3PXD2BA1X283 911 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 hCG_2039718K7EN88 272 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 MRASO14807 208 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 PHF1O43189 567 aaPredicted RBP17.68■□□□□ 0.42
SHMT1-209ENST00000582653 RNF13O43567 381 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 PATE4P0C8F1 98 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 UMPSP11172 480 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 APEHP13798 732 aaKnown RBP17.68■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF16P17020 682 aaPredicted RBP17.68■□□□□ 0.42
SHMT1-209ENST00000582653 ZP4Q12836 540 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 SNTB2Q13425 540 aaKnown RBP17.68■□□□□ 0.42
SHMT1-209ENST00000582653 DAG1Q14118 895 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 IQCCQ4KMZ1 466 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 FAM166AQ6J272 317 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 CARM1Q86X55 608 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 ARIH2OSQ8N7S6 290 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 OR6X1Q8NH79 312 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 RASSF5Q8WWW0 418 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 TMEM54Q969K7 222 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 MPP4Q96JB8 637 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 SH3GL1Q99961 368 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF426Q9BUY5 554 aa17.68■□□□□ 0.42
SHMT1-209ENST00000582653 REPIN1Q9BWE0 567 aaKnown RBP17.68■□□□□ 0.42
SHMT1-209ENST00000582653 STAMBPO95630 424 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 ASAH2BP0C7U1 165 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF14P17017 642 aaPredicted RBP17.67■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF23P17027 643 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 GIFP27352 417 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 PTDSS1P48651 473 aaKnown RBP17.67■□□□□ 0.42
SHMT1-209ENST00000582653 RAB1AP62820 205 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 SNX32Q86XE0 403 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 NKAIN4Q8IVV8 208 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 SKA3Q8IX90 412 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 OR8J3Q8NGG0 315 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 FGFBP3Q8TAT2 258 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 C10orf82Q8WW14 230 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF583Q96ND8 569 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 GLTPQ9NZD2 209 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF229Q9UJW7 825 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 KCNS2Q9ULS6 477 aa17.67■□□□□ 0.42
SHMT1-209ENST00000582653 BLOC1S5-TXNDC5H3BN57 136 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 HIST1H2ABP04908 130 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 ERCC1P07992 297 aaPredicted RBP17.66■□□□□ 0.42
SHMT1-209ENST00000582653 VIMP08670 466 aaKnown RBP17.66■□□□□ 0.42
SHMT1-209ENST00000582653 IGFBP1P08833 259 aaPredicted RBP17.66■□□□□ 0.42
SHMT1-209ENST00000582653 DAOP14920 347 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 NR4A1P22736 598 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 OR1E2P47887 323 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 GIPRP48546 466 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 MSMPQ1L6U9 139 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 COQ5Q5HYK3 327 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 LRFN4Q6PJG9 635 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 DEF8Q6ZN54 512 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 HIST3H2AQ7L7L0 130 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 CDK20Q8IZL9 346 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 PFN4Q8NHR9 129 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 HIST1H2ACQ93077 130 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 SLC19A3Q9BZV2 496 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 BPESC1Q9GZL8 116 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 DENND2DQ9H6A0 471 aaPredicted RBP17.66■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF446Q9NWS9 450 aa17.66■□□□□ 0.42
SHMT1-209ENST00000582653 NPPAP01160 153 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF35P13682 527 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 IGFBP5P24593 272 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 EVX1P49640 407 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 UGT2B15P54855 530 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 TAS2R41P59536 307 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 PIN1Q13526 163 aaPredicted RBP17.65■□□□□ 0.42
SHMT1-209ENST00000582653 RAB39AQ14964 217 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 FAM120AOSQ5T036 256 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF786Q8N393 782 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 TMEM255BQ8WV15 326 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 ZNF566Q969W8 418 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 SLC25A44Q96H78 314 aaPredicted RBP17.65■□□□□ 0.42
SHMT1-209ENST00000582653 RIMS3Q9UJD0 308 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 BAG5Q9UL15 447 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 CMAHPQ9Y471 501 aa17.65■□□□□ 0.42
SHMT1-209ENST00000582653 BBIP1A8MTZ0 92 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 RAB36O95755 333 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 TGFAP01135 160 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms