RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 SLC35A2P78381 396 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 RASGEF1BQ0VAM2 473 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 MEDAGQ5VYS4 303 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 MEPCEQ7L2J0 689 aaKnown RBP22.32■■□□□ 1.16
SHMT1-207ENST00000580002 Q96MT0 163 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 KCNK17Q96T54 332 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 TEAD3Q99594 435 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 ASF1BQ9NVP2 202 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 FKBP14Q9NWM8 211 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 H2AFY2Q9P0M6 372 aaPredicted RBP22.32■■□□□ 1.16
SHMT1-207ENST00000580002 FLVCR1Q9Y5Y0 555 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 SYNGR4O95473 234 aa22.31■■□□□ 1.16
SHMT1-207ENST00000580002 ATP6V1B1P15313 513 aa22.31■■□□□ 1.16
SHMT1-207ENST00000580002 EDNRAP25101 427 aa22.31■■□□□ 1.16
SHMT1-207ENST00000580002 SELENOPP49908 381 aa22.31■■□□□ 1.16
SHMT1-207ENST00000580002 TDGF1P3P51864 188 aa22.31■■□□□ 1.16
SHMT1-207ENST00000580002 POU4F3Q15319 338 aa22.31■■□□□ 1.16
SHMT1-207ENST00000580002 KCTD21Q4G0X4 260 aa22.31■■□□□ 1.16
SHMT1-207ENST00000580002 FAR1Q8WVX9 515 aa22.31■■□□□ 1.16
SHMT1-207ENST00000580002 ZMYND19Q96E35 227 aaPredicted RBP22.31■■□□□ 1.16
SHMT1-207ENST00000580002 RNFT2Q96EX2 444 aa22.31■■□□□ 1.16
SHMT1-207ENST00000580002 TAS2R16Q9NYV7 291 aa22.31■■□□□ 1.16
SHMT1-207ENST00000580002 USP24Q9UPU5 2620 aa22.31■■□□□ 1.16
SHMT1-207ENST00000580002 VAMP5O95183 116 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 CTLA4P16410 223 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 RPS7P62081 194 aaKnown RBP22.3■■□□□ 1.16
SHMT1-207ENST00000580002 PHYHD1Q5SRE7 291 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 CHMP1BQ7LBR1 199 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 TSPAN14Q8NG11 270 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 OR4F15Q8NGB8 312 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 RNF128Q8TEB7 428 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 LGALS12Q96DT0 336 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 MRPL13Q9BYD1 178 aaKnown RBP22.3■■□□□ 1.16
SHMT1-207ENST00000580002 SCN3BQ9NY72 215 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 VSX1Q9NZR4 365 aaPredicted RBP22.3■■□□□ 1.16
SHMT1-207ENST00000580002 SPTA1P02549 2419 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 NPIPB13A6NJU9 1138 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 NPIPB4C9JG80 1138 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 GSTT1P30711 240 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 HTR1FP30939 366 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 SARAFQ96BY9 339 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 SF3B5Q9BWJ5 86 aaKnown RBP22.3■■□□□ 1.16
SHMT1-207ENST00000580002 PRRG4Q9BZD6 226 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 TPRKBQ9Y3C4 175 aa22.3■■□□□ 1.16
SHMT1-207ENST00000580002 SLC16A7O60669 478 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 RENP00797 406 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 MRPL3P09001 348 aaKnown RBP22.29■■□□□ 1.16
SHMT1-207ENST00000580002 PGA4P0DJD7 388 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 PGA3P0DJD8 388 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 PAICSP22234 425 aaKnown RBP22.29■■□□□ 1.16
SHMT1-207ENST00000580002 ST3GAL4Q11206 333 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 LINC01590Q5TEZ4 76 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 GTF2IRD2BQ6EKJ0 949 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 TMEM154Q6P9G4 183 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 GTF2IRD2Q86UP8 949 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 TUSC5Q8IXB3 177 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 OR6X1Q8NH79 312 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 OR2M2Q96R28 347 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 TRIB1Q96RU8 372 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 COPS4Q9BT78 406 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 MCTS1Q9ULC4 181 aaKnown RBP22.29■■□□□ 1.16
SHMT1-207ENST00000580002 RPL36Q9Y3U8 105 aaKnown RBP22.29■■□□□ 1.16
SHMT1-207ENST00000580002 GTF3C1Q12789 2109 aa22.29■■□□□ 1.16
SHMT1-207ENST00000580002 ZNF432O94892 652 aa22.28■■□□□ 1.16
SHMT1-207ENST00000580002 MT-ND2P03891 347 aa22.28■■□□□ 1.16
SHMT1-207ENST00000580002 MTNR1AP48039 350 aa22.28■■□□□ 1.16
SHMT1-207ENST00000580002 ZNF585AQ6P3V2 769 aa22.28■■□□□ 1.16
SHMT1-207ENST00000580002 ADGRE4PQ86SQ3 457 aa22.28■■□□□ 1.16
SHMT1-207ENST00000580002 ADCK1Q86TW2 530 aa22.28■■□□□ 1.16
SHMT1-207ENST00000580002 ZNF511Q8NB15 262 aa22.28■■□□□ 1.16
SHMT1-207ENST00000580002 SLC25A44Q96H78 314 aaPredicted RBP22.28■■□□□ 1.16
SHMT1-207ENST00000580002 CCDC90BQ9GZT6 254 aa22.28■■□□□ 1.16
SHMT1-207ENST00000580002 B9D1Q9UPM9 204 aa22.28■■□□□ 1.16
SHMT1-207ENST00000580002 A6NIZ1 184 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 MAP2K4P45985 399 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 SLC25A1P53007 311 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 HCCSP53701 268 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 RAP1BP61224 184 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 RAP1AP62834 184 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 OR51G2Q8NGK0 314 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 OR52I1Q8NGK6 324 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 SIGLEC11Q96RL6 698 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 TVP23AA6NH52 213 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 SLC22A20A6NK97 555 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 ZNF726A6NNF4 738 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 PTGS2P35354 604 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 KLRB1Q12918 225 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 B3GNT6Q6ZMB0 384 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 GID4Q8IVV7 300 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 TMEM123Q8N131 208 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 OR6K6Q8NGW6 343 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 NSMAFQ92636 917 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 HTRA1Q92743 480 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 NMD3Q96D46 503 aaKnown RBP22.27■■□□□ 1.16
SHMT1-207ENST00000580002 CALHM2Q9HA72 323 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 PAQR5Q9NXK6 330 aaPredicted RBP22.27■■□□□ 1.16
SHMT1-207ENST00000580002 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP22.27■■□□□ 1.16
SHMT1-207ENST00000580002 COMMD3-BMI1R4GMX3 469 aa22.27■■□□□ 1.16
SHMT1-207ENST00000580002 IGLV1-36A0A0B4J1U3 117 aa22.26■■□□□ 1.15
SHMT1-207ENST00000580002 CSNK2BP67870 215 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms