RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 NUDT14O95848 222 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 MT-ATP6P00846 226 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 ADRB1P08588 477 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 GIMD1P0DJR0 217 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 GP1BBP13224 206 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 BCKDHBP21953 392 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 STARD6P59095 220 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 TNK1Q13470 666 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 DYRK1AQ13627 763 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 KLF9Q13886 244 aaPredicted RBP9.12□□□□□ -0.95
VPS53-220ENST00000576149 CBFBQ13951 182 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 RNASE12Q5GAN4 147 aaKnown RBP9.12□□□□□ -0.95
VPS53-220ENST00000576149 YOD1Q5VVQ6 348 aaPredicted RBP9.12□□□□□ -0.95
VPS53-220ENST00000576149 STAC2Q6ZMT1 411 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 DPY19L4Q7Z388 723 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 PRSS42Q7Z5A4 293 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 KMT5CQ86Y97 462 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 PM20D2Q8IYS1 436 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 IZUMO1Q8IYV9 350 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 BMPERQ8N8U9 685 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 OR6N2Q8NGY6 317 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 DNASE2BQ8WZ79 361 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 GTPBP2Q9BX10 602 aaKnown RBP9.12□□□□□ -0.95
VPS53-220ENST00000576149 GHITMQ9H3K2 345 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 COPZ2Q9P299 210 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 TMEM14AQ9Y6G1 99 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 COL5A1P20908 1838 aaPredicted RBP9.12□□□□□ -0.95
VPS53-220ENST00000576149 MPDZO75970 2070 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 TRABD2BA6NFA1 517 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 FADS1O60427 444 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 NPIPB7O75200 414 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 SLC25A12O75746 678 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 ANKRD34CP0C6C1 535 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 MYF5P13349 255 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 GIFP27352 417 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 MAPK3P27361 379 aaPredicted RBP9.12□□□□□ -0.95
VPS53-220ENST00000576149 SGCBQ16585 318 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 MAMDC2Q7Z304 686 aaPredicted RBP9.12□□□□□ -0.95
VPS53-220ENST00000576149 SPERTQ8NA61 448 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 PLPP5Q8NEB5 264 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 OR2G2Q8NGZ5 317 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 CEP76Q8TAP6 659 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 SLC25A38Q96DW6 304 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 INTS14Q96SY0 518 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 MRI1Q9BV20 369 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 CACNG6Q9BXT2 260 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 LIN7BQ9HAP6 207 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 TCF7L1Q9HCS4 588 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 FGF21Q9NSA1 209 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 IKZF2Q9UKS7 526 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 NUP210LQ5VU65 1888 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 TRIOO75962 3097 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 A0A1B0GTH9 108 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 A6NL46 340 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 OR4C45A6NMZ5 311 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 BCAT2O15382 392 aaPredicted RBP9.11□□□□□ -0.95
VPS53-220ENST00000576149 GPANK1O95872 356 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 CALCBP10092 127 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 RPS27P42677 84 aaKnown RBP9.11□□□□□ -0.95
VPS53-220ENST00000576149 P2RX1P51575 399 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 AFF3P51826 1226 aaKnown RBP9.11□□□□□ -0.95
VPS53-220ENST00000576149 POLR2HP52434 150 aaKnown RBP9.11□□□□□ -0.95
VPS53-220ENST00000576149 FAM69AQ5T7M9 428 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 SLC22A10Q63ZE4 541 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 WDR74Q6RFH5 385 aaPredicted RBP9.11□□□□□ -0.95
VPS53-220ENST00000576149 CHRDL2Q6WN34 429 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 LANCL3Q6ZV70 420 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 FCRLAQ7L513 359 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 ADGRG3Q86Y34 549 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 PLCZ1Q86YW0 608 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 LILRB4Q8NHJ6 448 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 CCDC74AQ96AQ1 378 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 DNAJA3Q96EY1 480 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 GON7Q9BXV9 100 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 SLITRK2Q9H156 845 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 AUNIPQ9H7T9 357 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 PLEKHA1Q9HB21 404 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 TMED7-TICAM2A0A0A6YYA0 188 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 HSPB2A8KAH6 182 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 CENPBD1B2RD01 187 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 C11orf98E9PRG8 122 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 XKRYO14609 159 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 ADAM10O14672 748 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 PHYHO14832 338 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 SUSD5O60279 629 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 ZNF432O94892 652 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 ADRA2CP18825 462 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 GDNFP39905 211 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 RAG2P55895 527 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 CLDN12P56749 244 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 DMWDQ09019 674 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 SNTB2Q13425 540 aaKnown RBP9.11□□□□□ -0.95
VPS53-220ENST00000576149 FCN2Q15485 313 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 HSPB2Q16082 182 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 PWWP2BQ6NUJ5 590 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 MTFR2Q6P444 385 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 LRRTM1Q86UE6 522 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 SPEM1Q8N4L4 309 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 OTOSQ8NHW6 89 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 ZNF519Q8TB69 540 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms