RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 LHBP01229 141 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 RBP1P09455 135 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 EFNA1P20827 205 aaPredicted RBP13.34□□□□□ -0.27
VPS53-218ENST00000575207 SLC6A2P23975 617 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 GUCY2DQ02846 1103 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 PHYHD1Q5SRE7 291 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 SLC27A4Q6P1M0 643 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 GPRIN3Q6ZVF9 776 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 ARFGAP2Q8N6H7 521 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 SCCPDHQ8NBX0 429 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 SLC30A7Q8NEW0 376 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 OR5R1Q8NH85 324 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 DPF1Q92782 380 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 NEIL1Q96FI4 390 aaPredicted RBP13.34□□□□□ -0.27
VPS53-218ENST00000575207 CDADC1Q9BWV3 514 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 C1QTNF3Q9BXJ4 246 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 TCF7L2Q9NQB0 619 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 EXOSC3Q9NQT5 275 aaKnown RBP13.34□□□□□ -0.27
VPS53-218ENST00000575207 GPATCH2Q9NW75 528 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 SH3BP4Q9P0V3 963 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 MKLN1Q9UL63 735 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 NUP214P35658 2090 aaPredicted RBP13.33□□□□□ -0.27
VPS53-218ENST00000575207 SERTM1A2A2V5 107 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 NPIPB8E9PQR5 432 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 M0R3G1 203 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 PGRMC1O00264 195 aaKnown RBP13.33□□□□□ -0.28
VPS53-218ENST00000575207 TBX19O60806 448 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 STX11O75558 287 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 JTBO76095 146 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 IFNW1P05000 195 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 B4GALT1P15291 398 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 ZNF43P17038 809 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 MROH9Q5TGP6 573 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 PIWIL3Q7Z3Z3 882 aaKnown RBP13.33□□□□□ -0.28
VPS53-218ENST00000575207 CALHM3Q86XJ0 350 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 PTOV1Q86YD1 416 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 TMEM123Q8N131 208 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 OR4C13Q8NGP0 309 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 WIPF2Q8TF74 440 aaPredicted RBP13.33□□□□□ -0.28
VPS53-218ENST00000575207 SAMD8Q96LT4 415 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 C3orf30Q96M34 536 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 RCHY1Q96PM5 261 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 OR7D2Q96RA2 312 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 ZNF382Q96SR6 550 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 PRPF18Q99633 342 aaKnown RBP13.33□□□□□ -0.28
VPS53-218ENST00000575207 ARHGDIGQ99819 225 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 RANBP3Q9H6Z4 567 aaPredicted RBP13.33□□□□□ -0.28
VPS53-218ENST00000575207 CDH20Q9HBT6 801 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 EXD2Q9NVH0 621 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 CGGBP1Q9UFW8 167 aaPredicted RBP13.33□□□□□ -0.28
VPS53-218ENST00000575207 FAM96BQ9Y3D0 163 aa13.33□□□□□ -0.28
VPS53-218ENST00000575207 C22orf46C9J442 243 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 AP3D1O14617 1153 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 TP73O15350 636 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 FBP1P09467 338 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 CCL2P13500 99 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 TNFAIP6P98066 277 aaPredicted RBP13.32□□□□□ -0.28
VPS53-218ENST00000575207 MFSD13AQ14CX5 517 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 MAPK14Q16539 360 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 IMPG1Q17R60 797 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 C3orf62Q6ZUJ4 267 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 KDM8Q8N371 416 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 OR56A1Q8NGH5 318 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 OR5D16Q8NGK9 328 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 IPCEF1Q8WWN9 437 aaPredicted RBP13.32□□□□□ -0.28
VPS53-218ENST00000575207 OIT3Q8WWZ8 545 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 WDFY2Q96P53 400 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 OR2M2Q96R28 347 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 CHID1Q9BWS9 393 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 GPR61Q9BZJ8 451 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 REEP4Q9H6H4 257 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 TIMM22Q9Y584 194 aa13.32□□□□□ -0.28
VPS53-218ENST00000575207 TMEM178BH3BS89 294 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 AKAP10O43572 662 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 SEC31AO94979 1220 aaKnown RBP13.31□□□□□ -0.28
VPS53-218ENST00000575207 OPN1SWP03999 348 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 LIPFP07098 398 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 PITPNBP48739 271 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 CCT3P49368 545 aaKnown RBP13.31□□□□□ -0.28
VPS53-218ENST00000575207 AQP5P55064 265 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 ETF1P62495 437 aaKnown RBP13.31□□□□□ -0.28
VPS53-218ENST00000575207 PLAURQ03405 335 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 FAM153CQ494X1 144 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 TEX35Q5T0J7 233 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 OLIG3Q7RTU3 272 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 FGFBP3Q8TAT2 258 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 LHX4Q969G2 390 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 CCDC126Q96EE4 140 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 PBKQ96KB5 322 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 CLN8Q9UBY8 286 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 POFUT2Q9Y2G5 429 aa13.31□□□□□ -0.28
VPS53-218ENST00000575207 PHYHO14832 338 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 AK1P00568 194 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 PATE4P0C8F1 98 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 TNFRSF1AP19438 455 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 WDR25Q64LD2 544 aaPredicted RBP13.3□□□□□ -0.28
VPS53-218ENST00000575207 NLRC3Q7RTR2 1065 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 C20orf196Q8IYI0 205 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 DTX3Q8N9I9 347 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 OR8B3Q8NGG8 313 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms