RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 MT-ATP6P00846 226 aa18.08■□□□□ 0.48
VPS53-216ENST00000574029 GPX2P18283 190 aa18.08■□□□□ 0.48
VPS53-216ENST00000574029 AHCYP23526 432 aa18.08■□□□□ 0.48
VPS53-216ENST00000574029 CSNK1A1P48729 337 aa18.08■□□□□ 0.48
VPS53-216ENST00000574029 MRPS11P82912 194 aaKnown RBP18.08■□□□□ 0.48
VPS53-216ENST00000574029 MAD2L1BPQ15013 274 aaPredicted RBP18.08■□□□□ 0.48
VPS53-216ENST00000574029 GKAP1Q5VSY0 366 aaPredicted RBP18.08■□□□□ 0.48
VPS53-216ENST00000574029 LINC00114Q6XXX2 140 aa18.08■□□□□ 0.48
VPS53-216ENST00000574029 ZNF584Q8IVC4 421 aa18.08■□□□□ 0.48
VPS53-216ENST00000574029 C10orf53Q8N6V4 93 aa18.08■□□□□ 0.48
VPS53-216ENST00000574029 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP18.08■□□□□ 0.48
VPS53-216ENST00000574029 TMEM54Q969K7 222 aa18.08■□□□□ 0.48
VPS53-216ENST00000574029 YIPF5Q969M3 257 aa18.08■□□□□ 0.48
VPS53-216ENST00000574029 SPDL1Q96EA4 605 aa18.08■□□□□ 0.48
VPS53-216ENST00000574029 IKZF5Q9H5V7 419 aa18.08■□□□□ 0.48
VPS53-216ENST00000574029 A0A0A6YYJ9 748 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 FAM157AC9JC47 383 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 SERPINB7O75635 380 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 TFP02787 698 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 SLC6A2P23975 617 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 TMEM33P57088 247 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 RAB39AQ14964 217 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 HSP90B2PQ58FF3 399 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 WDR88Q6ZMY6 472 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 PIWIL3Q7Z3Z3 882 aaKnown RBP18.07■□□□□ 0.48
VPS53-216ENST00000574029 RANBP3LQ86VV4 465 aaPredicted RBP18.07■□□□□ 0.48
VPS53-216ENST00000574029 ARMC8Q8IUR7 673 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 SKA3Q8IX90 412 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 OR5J2Q8NH18 312 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 FGFBP3Q8TAT2 258 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 TMEM186Q96B77 213 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 ZNF385DQ9H6B1 395 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 TCF7L2Q9NQB0 619 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 ZNF275Q9NSD4 429 aaPredicted RBP18.07■□□□□ 0.48
VPS53-216ENST00000574029 CCDC167Q9P0B6 97 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 SLC7A8Q9UHI5 535 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 SLC13A4Q9UKG4 626 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 FZR1Q9UM11 496 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 CORO2BQ9UQ03 480 aa18.07■□□□□ 0.48
VPS53-216ENST00000574029 WNT9BO14905 357 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 POLR3GO15318 223 aaPredicted RBP18.06■□□□□ 0.48
VPS53-216ENST00000574029 SERPINI2O75830 405 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 MFN2O95140 757 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 VENTXO95231 258 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 SERPINA5P05154 406 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 ADORA3P0DMS8 318 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 SAGP10523 405 aaPredicted RBP18.06■□□□□ 0.48
VPS53-216ENST00000574029 AQP1P29972 269 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 IDH3AP50213 366 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 BIDP55957 195 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 ZNF613Q6PF04 617 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 HIPK4Q8NE63 616 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 SEMA6DQ8NFY4 1073 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 OR6X1Q8NH79 312 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 ZFAND2BQ8WV99 257 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 STON2Q8WXE9 905 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 OCEL1Q9H607 264 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 NARFLQ9H6Q4 476 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 METTL17Q9H7H0 456 aaPredicted RBP18.06■□□□□ 0.48
VPS53-216ENST00000574029 HIF1ANQ9NWT6 349 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 DUSP13Q9UII6 198 aa18.06■□□□□ 0.48
VPS53-216ENST00000574029 ZNF346Q9UL40 294 aaKnown RBP18.06■□□□□ 0.48
VPS53-216ENST00000574029 C11orf98E9PRG8 122 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 FMO6PO60774 539 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 RP2O75695 350 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 NCR1O76036 304 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 MSMBP08118 114 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 PATE4P0C8F1 98 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 NAT2P11245 290 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 LSP1P33241 339 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 SLC22A24Q8N4F4 322 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 MCHR1Q99705 422 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 ARHGDIGQ99819 225 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 CCDC28BQ9BUN5 200 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 TREM2Q9NZC2 230 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 GLTPQ9NZD2 209 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 GRIP1Q9Y3R0 1128 aa18.05■□□□□ 0.48
VPS53-216ENST00000574029 EVPLLA8MZ36 301 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 CHP2O43745 196 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 EDF1O60869 148 aaKnown RBP18.04■□□□□ 0.48
VPS53-216ENST00000574029 GAAP10253 952 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 LMO4P61968 165 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 ZP4Q12836 540 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 C12orf54Q6X4T0 127 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 SLC35D2Q76EJ3 337 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 SMYD1Q8NB12 490 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 EBF4Q9BQW3 602 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 ZNF416Q9BWM5 594 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 LPAR2Q9HBW0 351 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 TMEM38BQ9NVV0 291 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 TAS2R5Q9NYW4 299 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 ANGPT4Q9Y264 503 aa18.04■□□□□ 0.48
VPS53-216ENST00000574029 A0A1W2PPW3 197 aa18.03■□□□□ 0.48
VPS53-216ENST00000574029 M0R3H8 397 aa18.03■□□□□ 0.48
VPS53-216ENST00000574029 ENTPD5O75356 428 aa18.03■□□□□ 0.48
VPS53-216ENST00000574029 OR6A2O95222 327 aa18.03■□□□□ 0.48
VPS53-216ENST00000574029 OR8G3PP0DMU2 310 aa18.03■□□□□ 0.48
VPS53-216ENST00000574029 PCBP3P57721 371 aaKnown RBP18.03■□□□□ 0.48
VPS53-216ENST00000574029 ZNF74Q16587 644 aa18.03■□□□□ 0.48
VPS53-216ENST00000574029 RGS7BPQ6MZT1 257 aaPredicted RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms